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Sample GSM997567 Query DataSets for GSM997567
Status Public on Nov 29, 2012
Title H9-derived neurons CD44- EGFR- biological rep 1-2
Sample type RNA
 
Source name Neurons CD44- EGFR- from H9
Organism Homo sapiens
Characteristics cell line: H9
cell type: neurons CD44- EGFR-
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX ref8 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina BeadArray Reader scanner
Description Gene expression data from H9 neurons
FL2
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. Quantile normalization is performed.
 
Submission date Sep 04, 2012
Last update date Nov 29, 2012
Contact name Jeffrey Zhao
Organization name Memorial Sloan Kettering Cancer Center
Department Genomics Core
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL6884
Series (1)
GSE40593 Impaired intrinsic immunity to HSV-1 in human iPSC-derived TLR3-deficient CNS cells

Data table header descriptions
ID_REF
VALUE quantile normalization
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 83.18287 17 17.50827 0.7048748
ILMN_2055271 117.3802 8 22.31181 0.08432148
ILMN_1736007 154.9432 20 24.75288 0.02371541
ILMN_2383229 78.5901 19 11.59956 0.7878788
ILMN_1806310 98.31993 15 17.06924 0.2779974
ILMN_1779670 112.4739 14 25.53045 0.1172596
ILMN_1653355 98.92297 19 16.90382 0.2674572
ILMN_1717783 78.7373 16 13.95953 0.7852437
ILMN_1705025 84.172 14 19.35548 0.6772069
ILMN_1814316 581.1488 16 74.86465 0
ILMN_2359168 501.4427 17 47.83842 0.001317523
ILMN_1731507 170.2661 18 29.9882 0.01054018
ILMN_1787689 116.5936 17 20.1743 0.08959157
ILMN_1745607 85.37157 22 13.68832 0.6284585
ILMN_2136495 62.65141 9 8.577415 0.9920949
ILMN_1668111 90.30778 18 19.47356 0.4888011
ILMN_2295559 79.43323 21 9.364296 0.7786561
ILMN_1735045 86.13228 17 14.48873 0.6060606
ILMN_1680754 127.1507 14 21.78706 0.05270092
ILMN_2375184 88.29079 20 16.66691 0.5494071

Total number of rows: 48803

Table truncated, full table size 2041 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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