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Sample GSM986 Query DataSets for GSM986
Status Public on Feb 12, 2002
Title DBYyap1- 37degree heat - 20 min (redo)
Sample type RNA
 
Channel 1
Source name time = 0 min (at 30 degrees)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 20 min (at 37 degrees)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.05 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11-85
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 117 73 834 333 288 51 45 78 506 584 .865 0 -.721 .359 93 83 2.896 1.648 .345 .607 .327 1206 145 111 126 157 172
2 149 80 613 468 418 60 50 87 734 821 .949 0 .26 .564 63 63 1.467 .835 .682 1.197 .698 1049 145 110 125 174 189
3 103 61 3345 2184 2138 55 46 80 3751 3831 .95 0 .165 .635 93 88 1.565 .892 .639 1.121 .615 1049 145 110 125 192 207
4 66 59 65 77 31 51 46 80 55 135 .939 -100 -.241 .71 18 17 2.097 1.182 .477 .846 .49 1049 145 110 125 209 224
5 66 54 1618 1063 1020 56 43 75 1789 1864 .965 0 .145 .615 78 68 1.586 .904 .63 1.106 .626 1071 145 110 125 227 242
6 61 52 104 93 55 50 38 66 97 163 .941 -100 -.101 .487 42 27 1.891 1.072 .529 .933 .622 1049 145 110 125 245 260
7 52 49 38 1 42 37 64 2 66 .007 0 .909 13 20 0 .006 1049 145 110 125 262 277
8 48 46 1 37 40 37 64 64 0 1.125 14 17 0 1049 145 110 125 280 295
9 49 46 7 37 42 38 66 64 .017 0 .741 23 11 .013 1032 145 110 125 297 312
10 49 45 4 36 42 37 64 63 .414 0 .714 26 16 .354 1025 145 110 125 315 330
11 47 41 22 53 19 39 34 59 33 92 .33 0 .585 1.221 45 37 1.158 .667 .864 1.5 .339 993 145 110 125 333 348
12 49 38 6 36 5 38 31 54 9 63 .421 0 .585 1.207 25 25 1.2 .667 .833 1.5 .421 1009 145 110 125 350 365
13 54 41 7 37 5 38 32 56 8 64 .17 0 .193 .754 26 26 1.4 .875 .714 1.143 .157 1027 145 110 125 368 383
14 52 44 2 36 1 39 35 61 2 63 .087 0 0 .688 16 17 2 1 .5 1 .068 1017 145 110 125 385 400
15 52 48 1 42 4 41 38 66 7 73 .17 0 2.807 .8 15 22 .25 .143 4 7 .154 1030 145 110 125 403 418
16 52 49 40 2 42 38 66 4 70 0 1.167 9 22 0 1017 145 110 125 421 436
17 51 48 1 39 1 40 38 66 2 68 .02 0 1 1.156 15 17 1 .5 1 2 .018 1017 145 110 125 438 453
18 53 48 1 40 1 41 39 68 2 70 .208 0 1 .857 14 17 1 .5 1 2 .201 1027 145 110 125 456 471
19 52 48 4 41 2 41 39 68 3 71 0 -.415 .738 21 20 2 1.333 .5 .75 974 145 110 125 473 488
20 50 48 1 43 4 41 39 68 7 75 .142 0 2.807 .714 16 19 .25 .143 4 7 .12 1023 145 109 124 489 504

Total number of rows: 9216

Table truncated, full table size 1023 Kbytes.




Supplementary data files not provided
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