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Sample GSM983155 Query DataSets for GSM983155
Status Public on Aug 10, 2012
Title Tumor_252_HCI
Sample type RNA
Source name Primary tumor 252 generated from Muc-PyMT10C lentivirus, papillary histology
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
lentivirus: Muc-PyMT10C
primary tumor: N/A
histology: Papillary
number of insertion sites: Unknown
combat group: 4
Treatment protocol No treatments
Growth protocol Mammary epithelial cells were infected with specified lentivirus, then transplanted into cleared fat pads of recipient mice. Tumors were harvested at 2 cm and a portion was flash frozen.
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy kit
Label Cy3
Label protocol Agilent One-Color Quick Amp Labeling Protocol
Hybridization protocol Agilent One-color Gene Expression Hybridization and Wash Protocol
Scan protocol Microarrays were scanned on an Agilent Technologies G2505C scanner at 5 micron resolution
Data processing Array images were processed in Agilent Feature Extraction software version, which produces spatially detrended intensity data
Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
Submission date Aug 09, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
VALUE Log 2 transformed normalized intensity data

Data table
A_51_P100021 4.648887321
A_51_P100034 10.31577156
A_51_P100052 5.259922616
A_51_P100084 10.13853902
A_51_P100099 7.433660091
A_51_P100155 10.40386697
A_51_P100174 8.433091772
A_51_P100218 3.011562138
A_51_P100227 9.277464556
A_51_P100238 4.802099141
A_51_P100246 7.755153766
A_51_P100289 10.0261892
A_51_P100327 6.444783541
A_51_P100347 2.966743477
A_51_P100470 6.010057776
A_51_P100537 5.09984116
A_51_P100565 6.838633502
A_51_P100624 3.876192158
A_51_P100625 4.706419801
A_51_P100768 2.696056932

Total number of rows: 13988

Table truncated, full table size 339 Kbytes.

Supplementary file Size Download File type/resource
GSM983155_Tumor_252_HCI.txt.gz 9.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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