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Sample GSM983152 Query DataSets for GSM983152
Status Public on Aug 10, 2012
Title Tumor_1058_HCI
Sample type RNA
Source name Secondary tumor 1058 regenerated from primary tumor 27 tissue, EF1α-PyMT10C lentivirus, spindloid histology
Organism Mus musculus
Characteristics tissue type: mouse mammary tumor
lentivirus: EF1α-PyMT10C
primary tumor: 27
histology: Spindloid
number of insertion sites: Unknown
combat group: 4
Treatment protocol No treatments
Growth protocol Mammary epithelial cells were infected with specified lentivirus, then transplanted into cleared fat pads of recipient mice. Tumors were harvested at 2 cm and a portion was flash frozen.
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy kit
Label Cy3
Label protocol Agilent One-Color Quick Amp Labeling Protocol
Hybridization protocol Agilent One-color Gene Expression Hybridization and Wash Protocol
Scan protocol Microarrays were scanned on an Agilent Technologies G2505C scanner at 5 micron resolution
Data processing Array images were processed in Agilent Feature Extraction software version, which produces spatially detrended intensity data
Array data was filtered to remove control features and any non-uniform features or population outlier features. Remaining features were averaged to yield a single value for each unique probe. Finally data were log2 transformed, quantile normalized, and adjusted for batch effects using ComBat.
Submission date Aug 09, 2012
Last update date Feb 07, 2013
Contact name Bryan Welm
Phone 801-587-4633
Organization name University of Utah, Huntsman Cancer Institute
Department Oncological Science
Lab Bryan Welm Lab
Street address 2000 Circle of Hope Drive
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platform ID GPL7202
Series (1)
GSE40001 Targeting PyMT oncogene to diverse mammary cell populations enhances tumor heterogeneity and generates rare breast cancer subtypes

Data table header descriptions
VALUE Log 2 transformed normalized intensity data

Data table
A_51_P100021 4.447818546
A_51_P100034 9.031475728
A_51_P100052 3.004620565
A_51_P100084 7.100197642
A_51_P100099 7.068181986
A_51_P100155 11.16688592
A_51_P100174 7.313312994
A_51_P100218 4.362005714
A_51_P100227 9.322275082
A_51_P100238 3.181266321
A_51_P100246 8.80143277
A_51_P100289 9.564337407
A_51_P100327 4.682106326
A_51_P100347 3.49378721
A_51_P100470 7.307319321
A_51_P100537 5.568022734
A_51_P100565 9.746126114
A_51_P100624 2.337327728
A_51_P100625 6.544472515
A_51_P100768 4.893747396

Total number of rows: 13988

Table truncated, full table size 339 Kbytes.

Supplementary file Size Download File type/resource
GSM983152_Tumor_1058_HCI.txt.gz 9.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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