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Sample GSM983 Query DataSets for GSM983
Status Public on Feb 12, 2002
Title 37 deg growth
Sample type RNA
 
Channel 1
Source name 33 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n127
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 152 139 591 425 354 80 71 64 320 384 .822 0 -.884 .589 91 80 1.669 1.846 .599 .542 .65 1011 208 91 107 117 133 -.884
2 206 183 18 85 2 108 83 75 2 77 .17 0 -3.315 .293 14 8 9 9.949 .111 .101 .057 799 208 90 106 134 150 -3.315
3 199 175 812 710 624 114 86 78 564 642 .79 0 -.525 .753 88 91 1.301 1.439 .768 .695 .503 802 208 90 106 152 168 -.525
4 174 167 24 79 89 81 73 -2 71 .131 0 .323 18 5 .046 799 208 90 106 169 185
5 171 167 271 258 178 87 80 72 161 233 .838 0 -.751 .644 79 83 1.522 1.683 .657 .594 .575 802 208 90 106 187 203 -.751
6 195 171 11 86 1 108 85 77 1 78 .175 0 -3.604 .293 12 6 11 12.16 .091 .082 .067 799 208 90 106 204 220 -3.604
7 205 178 1 87 1 111 86 78 1 79 .086 0 -.145 .548 4 3 1 1.105 1 .905 .042 802 208 90 106 222 238 -.145
8 183 180 2 85 1 89 84 76 1 77 -.003 0 -1.145 .46 5 5 2 2.211 .5 .452 -.002 775 208 90 106 239 255 -1.145
9 171 169 77 82 80 72 -3 70 .129 0 .467 3 2 .063 781 208 90 106 257 273
10 178 172 77 85 80 72 -3 70 -.002 0 1 1 4 -.001 768 208 90 106 275 291
11 192 180 85 102 88 80 -3 77 .07 0 .351 3 4 .037 765 208 90 106 292 308
12 194 179 89 120 91 82 -2 81 .118 0 .388 4 5 .061 802 208 89 105 310 326
13 192 175 84 125 92 83 -7 76 -.049 0 .619 3 1 -.026 799 208 89 105 327 343
14 185 175 89 107 92 83 -3 81 .09 0 .627 5 4 .047 812 208 89 105 345 361
15 187 181 88 97 93 84 -5 80 .047 0 .333 5 3 .025 799 208 89 105 362 378
16 184 175 80 93 91 82 -10 72 .013 0 .571 2 1 .006 815 208 89 105 380 396
17 185 169 77 91 87 79 -9 70 .086 0 .571 2 1 .049 791 208 89 105 398 414
18 187 174 85 89 86 78 -1 77 .041 0 .747 3 4 .024 775 208 89 105 415 431
19 179 175 8 99 9 92 90 81 8 90 .088 0 .025 .704 5 11 .889 .983 1.125 1.018 .049 768 208 89 105 433 449 .025
20 177 173 10 95 1 98 94 85 1 86 .073 0 -3.467 .556 6 6 10 11.055 .1 .09 .045 765 208 89 105 450 466 -3.467

Total number of rows: 8832

Table truncated, full table size 1040 Kbytes.




Supplementary data files not provided
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