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Sample GSM98269 Query DataSets for GSM98269
Status Public on Feb 23, 2007
Title 40%sugar_LS_1
Sample type RNA
 
Source name mRNA
Organism Saccharomyces cerevisiae
Characteristics Commercial baker's yeast specilized for use in unsugared dough.
Extracted molecule polyA RNA
Extraction protocol Each samples of total RNA were extracted using the hot phenol method. Poly (A)+ RNA was isolated from the total RNA by using an Oligotex® dt30 (super) mRNA purification kit (Takara, Japan) according to the manufacturer’s instructions.
Label Biotin
Label protocol Labeling was done according to the Affymetrix GeneChip® Expression Analysis Technical Manual.
 
Description After 60min fermentation using 40% sucrose LF medium.
Data processing Affymetrix GeneChip Operating Software Version 1.2
 
Submission date Feb 23, 2006
Last update date Feb 27, 2006
Contact name Jun Shima
E-mail(s) shimaj@nfri.affrc.go.jp
Organization name National Food Research Institute
Department Applied Microbiology
Lab Yeast
Street address 1-2-12 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8642
Country Japan
 
Platform ID GPL2529
Series (1)
GSE4295 Sugar stress during fermentation (baker's yeast)

Data table header descriptions
ID_REF
VALUE Normalized value (Per Chip, Per Gene)
BKD_RAW Control signal (calculated :GeneSpring)
SIGNAL_RAW Raw intensities (measured: Affymetrix GeneChip)
ABS_CALL Flag (Affymetrix)

Data table
ID_REF VALUE BKD_RAW SIGNAL_RAW ABS_CALL
1769308_at 40.02 14.28 571.4 P
1769309_at 1.296 4.186 5.426 A
1769310_at 1.253 4.186 5.246 A
1769311_at 0.689 303.7 209.1 P
1769312_at 1.14 37 42.19 P
1769313_at 4.774 23.94 114.3 P
1769314_at 0.93 599 557.2 P
1769315_at 0.867 4.186 3.627 A
1769316_s_at 0.177 4.186 0.74 A
1769317_at 0.84 145.3 122 P
1769318_at 0.25 4.186 1.046 A
1769319_at 1.557 115.9 180.4 P
1769320_at 0.816 53.8 43.9 A
1769321_at 0.425 77.39 32.91 P
1769322_s_at 1.163 57.93 67.39 P
1769323_at 0.701 113.7 79.7 P
1769324_at 1.348 64.39 86.82 P
1769325_at 0.737 7.521 5.541 A
1769326_at 0.15 4.186 0.626 A
1769327_at 0.209 4.186 0.875 A

Total number of rows: 10928

Table truncated, full table size 329 Kbytes.




Supplementary file Size Download File type/resource
GSM98269.CEL.gz 1.4 Mb (ftp)(http) CEL
GSM98269.CHP.gz 58.8 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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