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Sample GSM981 Query DataSets for GSM981
Status Public on Feb 12, 2002
Title 25 deg growth
Sample type RNA
 
Channel 1
Source name 33 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 25 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n125
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 62 59 370 281 249 34 32 41 315 356 .823 0 -.232 .663 87 84 1.486 1.175 .673 .851 .672 1011 208 105 121 103 119 -.232
2 98 58 37 3 111 34 43 4 47 .084 0 .559 17 21 .049 777 208 105 121 120 136
3 105 58 383 378 343 126 35 44 434 478 .725 0 .18 .938 89 86 1.117 .882 .896 1.133 .597 768 208 105 121 138 154 .18
4 67 55 3 38 5 49 33 42 6 48 .035 0 1 .75 20 27 .6 .5 1.667 2 .021 765 208 105 121 155 171 1
5 62 53 174 183 150 41 33 42 190 232 .897 0 .127 .833 78 81 1.16 .916 .862 1.092 .777 779 208 105 121 173 189 .127
6 127 53 1 34 1 112 33 42 1 43 .059 0 0 .5 19 16 1 1 1 1 .04 789 208 105 121 190 206 0
7 132 52 4 31 113 32 41 39 .136 0 .476 18 13 .076 802 208 105 121 208 224
8 76 53 5 34 3 49 31 39 4 43 .01 0 -.322 .708 22 22 1.667 1.25 .6 .8 .005 799 208 105 121 225 241 -.322
9 72 55 34 2 46 32 41 2 43 -.069 0 .857 11 17 -.045 826 208 105 121 243 259
10 92 58 32 98 33 42 41 -.037 0 .706 14 14 -.022 802 208 105 121 261 277
11 107 58 1 32 114 33 42 41 .052 0 .625 15 16 .032 799 208 105 121 278 294
12 143 57 1 33 2 148 31 39 3 42 .008 0 1.585 .533 20 19 .5 .333 2 3 .004 802 208 105 121 296 312 1.585
13 174 59 32 202 34 43 41 -.026 0 .55 12 15 -.017 799 208 105 121 313 329
14 124 60 2 33 121 33 42 42 .065 0 .778 15 14 .033 768 208 106 122 331 347
15 110 59 35 2 88 33 42 2 44 .069 0 .667 13 20 .044 765 208 106 122 348 364
16 106 57 1 33 89 34 43 42 -.122 0 .532 14 10 -.068 768 208 106 122 366 382
17 74 57 3 34 50 35 44 43 -.073 0 .36 17 11 -.04 765 208 106 122 383 399
18 72 59 33 47 35 44 42 -.036 0 .526 16 12 -.02 803 208 106 122 401 417
19 64 58 2 37 2 42 35 44 3 47 .044 0 .585 .611 14 17 1 .667 1 1.5 .025 793 208 106 122 419 435 .585
20 71 59 5 35 51 35 44 44 .01 0 .559 18 16 .006 799 208 106 122 436 452

Total number of rows: 8832

Table truncated, full table size 1010 Kbytes.




Supplementary data files not provided
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