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Sample GSM978 Query DataSets for GSM978
Status Public on Feb 12, 2002
Title 17 deg growth
Sample type RNA
 
Channel 1
Source name 33 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 17 deg
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n123
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 63 61 415 397 353 45 44 22 177 199 .863 0 -1.233 .858 89 80 1.176 2.351 .851 .425 .892 1011 208 126 142 92 108 -1.233
2 68 58 17 64 20 86 44 22 10 32 .692 0 -.766 1.067 24 26 .85 1.7 1.176 .588 .727 799 208 125 141 109 125 -.766
3 68 59 423 552 507 91 45 23 254 276 .812 0 -.739 1.251 89 93 .834 1.669 1.199 .599 .905 802 208 125 141 127 143 -.739
4 60 57 13 64 20 49 44 22 10 32 .703 0 -.379 .975 27 28 .65 1.3 1.538 .769 .742 799 208 125 141 144 160 -.379
5 56 53 233 306 262 47 44 22 131 153 .913 0 -.831 1.204 85 85 .889 1.779 1.124 .562 .979 802 208 125 141 162 178 -.831
6 75 51 30 81 37 109 44 22 19 41 .874 0 -.697 1.17 33 23 .811 1.622 1.233 .617 1.175 799 208 125 141 179 195 -.697
7 78 53 5 42 111 42 21 0 21 .099 0 .909 25 16 .065 812 208 125 141 197 213
8 58 54 1 46 4 51 42 21 2 23 .023 0 1 .824 17 18 .25 .5 4 2 .015 799 208 125 141 214 230 1
9 57 55 43 50 43 22 0 22 -.056 0 1 7 12 -.036 815 208 125 141 232 248
10 60 54 4 43 86 45 23 -1 22 .031 0 .971 20 13 .019 802 208 125 141 250 266
11 74 55 1 46 120 46 23 0 23 .004 0 .703 16 13 .003 799 208 125 141 267 283
12 86 56 33 140 45 23 -6 17 .616 0 .429 12 10 .369 802 208 125 141 285 301
13 96 56 37 182 45 23 -4 19 .466 0 1.111 12 11 .385 799 208 125 141 302 318
14 82 56 9 51 5 130 46 23 3 26 .413 0 -1.848 .591 26 18 1.8 3.6 .556 .278 .301 812 208 125 141 320 336 -1.848
15 68 57 7 53 6 70 47 24 3 27 .556 0 -1.222 .617 23 18 1.167 2.333 .857 .429 .362 799 208 125 141 337 353 -1.222
16 67 56 1 46 1 64 45 23 1 23 .129 0 -1 .882 15 13 1 2 1 .5 .078 805 208 125 141 355 371 -1
17 58 54 3 47 2 51 45 23 1 24 -.015 0 -1.585 .694 20 15 1.5 3 .667 .333 -.01 777 208 125 141 373 389 -1.585
18 58 52 4 46 1 50 45 23 1 23 -.061 0 -3 .688 20 12 4 8 .25 .125 -.041 765 208 125 141 390 406 -3
19 57 53 9 46 1 50 45 23 1 23 .026 0 -4.17 .556 26 12 9 18 .111 .056 .016 768 208 125 141 408 424 -4.17
20 60 54 5 46 61 46 23 0 23 .082 0 .5 20 12 .05 765 208 125 141 425 441

Total number of rows: 8832

Table truncated, full table size 1024 Kbytes.




Supplementary data files not provided
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