NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM968 Query DataSets for GSM968
Status Public on Feb 12, 2002
Title 2.5mM DTT 180 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 180 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y13n020
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL53
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 95 88 724 260 146 123 114 165 212 377 .662 0 -1.772 .202 96 66 4.959 3.415 .202 .293 .213 990 225 62 79 50 67 -1.772
2 94 85 72 135 16 127 119 172 24 196 .644 0 -1.585 .653 28 19 4.5 3 .222 .333 .249 756 225 61 78 67 84 -1.585
3 91 80 840 330 209 134 121 175 303 478 .739 0 -1.471 .255 84 74 4.019 2.772 .249 .361 .222 756 225 61 78 85 102 -1.471
4 85 78 66 152 31 132 121 175 45 220 .735 0 -.553 .84 28 24 2.129 1.467 .47 .682 .328 756 225 61 78 102 119 -.553
5 78 77 345 223 107 123 116 168 155 323 .671 0 -1.154 .331 74 66 3.224 2.226 .31 .449 .217 745 225 61 78 120 137 -1.154
6 83 78 23 131 17 122 114 165 25 190 .377 0 .12 .982 23 18 1.353 .92 .739 1.087 .35 731 225 61 78 137 154 .12
7 83 76 123 10 121 113 164 14 178 -.139 0 2.348 8 20 -.255 720 225 61 78 155 172
8 77 72 2 127 11 128 116 168 16 184 .039 0 3 1.391 15 17 .182 .125 5.5 8 .076 720 225 61 78 172 189 3
9 75 71 9 108 132 122 177 157 .031 0 1.565 19 8 .053 756 225 60 77 190 207
10 77 68 8 134 14 127 120 174 20 194 .125 0 1.322 1.738 17 21 .571 .4 1.75 2.5 .227 756 225 60 77 207 224 1.322
11 87 69 6 113 132 119 172 164 .038 0 2 16 11 .064 756 225 60 77 225 242
12 180 70 122 2 153 120 174 3 177 -.019 0 2.4 10 11 -.034 756 225 60 77 242 259
13 178 74 6 134 13 152 121 175 19 194 .133 0 1.663 1.679 14 15 .462 .316 2.167 3.167 .34 756 225 60 77 260 277 1.663
14 84 75 134 11 175 123 178 16 194 -.104 0 2.63 8 20 -.239 731 225 60 77 277 294
15 82 77 121 4 167 117 170 5 175 .093 0 2.56 8 15 .177 720 225 60 77 295 312
16 78 73 125 8 131 117 170 11 181 .036 0 2.073 12 16 .069 720 225 60 77 312 329
17 83 75 118 134 124 180 171 .15 0 1.311 15 9 .211 756 225 59 76 330 347
18 87 80 5 123 136 124 180 178 -.057 0 1.833 13 9 -.089 756 225 59 76 347 364
19 83 78 5 121 3 135 118 171 4 175 -.003 0 -.322 1.25 15 13 1.667 1.25 .6 .8 -.004 756 225 59 76 365 382 -.322
20 81 76 120 136 122 177 174 .09 0 1.647 12 12 .121 756 225 59 76 382 399

Total number of rows: 8832

Table truncated, full table size 1039 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap