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Sample GSM957923 Query DataSets for GSM957923
Status Public on May 06, 2013
Title PHEO_AG_HS_132
Sample type genomic
Source name paraganglioma, benign
Organism Homo sapiens
Characteristics tissue: paraganglioma
Sex: male
mutation (gene): MAX
mutation (type): somatic
malignancy: benign
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tissue samples using a QIAamp DNA mini kit or an AllPrep kit (Qiagen).
Label Cy5 and Cy3
Label protocol Standard Illumina protocol.
Hybridization protocol Standard Illumina protocol.
Scan protocol Standard Illumina protocol.
Description paraganglioma
Data processing Standard Illumina protocol. Beta values were exported from Illumina Beadstudio software.
Submission date Jul 09, 2012
Last update date May 06, 2013
Contact name Eric Letouzé
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
Platform ID GPL8490
Series (2)
GSE39198 Genome-scale methylome profiling of pheochromocytomas and paragangliomas with Illumina Infinium 27k Human Methylation arrays
GSE43298 Genome-scale methylome profiling of human pheochromocytomas and paragangliomas (Illumina methylation beadchips) and mouse chromaffin cells (RRBS)
Reanalyzed by GSM1060190

Data table header descriptions
VALUE Beta value

Data table
cg00000292 0.4430076 3.678e-38
cg00002426 0.1116302 3.678e-38
cg00003994 0.05794991 3.678e-38
cg00005847 0.8051164 3.678e-38
cg00006414 0.02538339 3.678e-38
cg00007981 0.04010417 3.678e-38
cg00008493 0.9766579 3.678e-38
cg00008713 0.02383646 3.678e-38
cg00009407 0.006975101 3.678e-38
cg00010193 0.5402587 3.678e-38
cg00011459 0.8275099 3.678e-38
cg00012199 0.01140297 3.678e-38
cg00012386 0.03986152 3.678e-38
cg00012792 0.03194839 3.678e-38
cg00013618 0.5903742 3.678e-38
cg00014085 0.01601768 3.678e-38
cg00014837 0.6376291 3.678e-38
cg00015770 0.0603027 3.678e-38
cg00016968 0.6441721 3.678e-38
cg00019495 0.3085463 3.678e-38

Total number of rows: 27578

Table truncated, full table size 849 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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