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Sample GSM946546 Query DataSets for GSM946546
Status Public on Jun 11, 2012
Title PSU_ChipSeq_CH12_H3K4me1
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001923
replicate: 1
strain: B10.H-2aH-4bp/Wts
strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Jun 11, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (3)
GSE36028 Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX153186
BioSample SAMN01047989
Named Annotation GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputRepSignalRep1.bigWig
Named Annotation GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputRepSignalRep2.bigWig
Named Annotation GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputSig.bigWig

Supplementary file Size Download File type/resource
GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputPk.broadPeak.gz 1.8 Mb (ftp)(http) BROADPEAK
GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputRepPeaksRep1.broadPeak.gz 1.4 Mb (ftp)(http) BROADPEAK
GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputRepPeaksRep2.broadPeak.gz 1.8 Mb (ftp)(http) BROADPEAK
GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputRepSignalRep1.bigWig 4.2 Gb (ftp)(http) BIGWIG
GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputRepSignalRep2.bigWig 5.2 Gb (ftp)(http) BIGWIG
GSM946546_mm9_wgEncodePsuHistoneCh12H3k04me1FImmortal2a4bInputSig.bigWig 5.6 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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