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GEO accession:
Sample GSM946534
Query DataSets for GSM946534
Status
Public on Jun 11, 2012
Title
PSU_ChipSeq_G1E-ER4_H3K4me1
Sample type
SRA
Source name
G1E-ER4
Organism
Mus musculus
Characteristics
lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: E0
age description: Embryonic day 0 (stem cell)
control: None
control description: No special treatment or protocol applies
controlid: wgEncodeEM001921
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider
Mitch Weiss lab
Treatment protocol
diffProtD_24hr
Growth protocol
G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuHistone
Submission date
Jun 11, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9250
Series (3)
GSE36028
Histone Modifications by ChIP-seq from ENCODE/PSU
GSE49847
A comparative encyclopedia of DNA elements in the mouse genome
GSE51338
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Relations
Reanalyzed by
GSE61349
SRA
SRX153174
BioSample
SAMN01047977
Named Annotation
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputRepSignalRep1.bigWig
Named Annotation
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputRepSignalRep2.bigWig
Named Annotation
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputSig.bigWig
Supplementary file
Size
Download
File type/resource
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputPk.broadPeak.gz
2.0 Mb
(ftp)
(http)
BROADPEAK
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputRepPeaksRep1.broadPeak.gz
1.1 Mb
(ftp)
(http)
BROADPEAK
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputRepPeaksRep2.broadPeak.gz
1.9 Mb
(ftp)
(http)
BROADPEAK
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputRepSignalRep1.bigWig
3.2 Gb
(ftp)
(http)
BIGWIG
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputRepSignalRep2.bigWig
5.0 Gb
(ftp)
(http)
BIGWIG
GSM946534_mm9_wgEncodePsuHistoneG1eer4e2H3k04me1ME0S129InputSig.bigWig
5.3 Gb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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