|
| Status |
Public on Aug 24, 2012 |
| Title |
Pediatric Astrocytoma II (diffuse low grade astrocytoma) A2-4825 |
| Sample type |
RNA |
| |
|
| Source name |
Pediatric Astrocytoma Tumor Sample 4
|
| Organism |
Homo sapiens |
| Characteristics |
tumor grade: II (diffuse low grade astrocytoma)
tissue: Pediatric Astrocytoma Tumor
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from flash-frozen pediatric astrocytoma samples. Total cellular RNA was extracted using Qiagen's RNA isolation kit according to manufacturer's protocol, and genomic DNA contamination was removed by an on-column Dnase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer
|
| Label |
Cy3
|
| Label protocol |
standard Agilent protocol
|
| |
|
| Hybridization protocol |
standard Agilent protocol
|
| Scan protocol |
standard Agilent protocol
|
| Data processing |
Cy3 median signal intensities were recovered from Agilent Feature Extraction software output, converted to Log2 scale and quantile normalized between arrays, and duplicated probe signals were merged by taking their median values (see series normalized data file).
|
| |
|
| Submission date |
May 30, 2012 |
| Last update date |
Aug 24, 2012 |
| Contact name |
Jane Engler |
| E-mail(s) |
jane.engler@ucsf.edu
|
| Organization name |
UCSF
|
| Street address |
1450 3rd Street
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
|
| Platform ID |
GPL4133 |
| Series (1) |
| GSE38330 |
Gene Expression Profiling of Human Pediatric Astrocytomas |
|
