|
| Status |
Public on May 10, 2012 |
| Title |
LICR_RnaSeq_Liver_E14.5 (superseded by GSE93463) |
| Sample type |
SRA |
| |
|
| Source name |
Liver
|
| Organism |
Mus musculus |
| Characteristics |
lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Liver
cell organism: mouse
cell description: Liver
cell sex: U
age: E14.5
age description: Embryonic day 14.5
age: E14.5
age description: Embryonic day 14.5
labversion: 11/10/10 Lane 5
readtype: 1x36
readtype description: Single 36 nt reads
replicate: 1
softwareversion: TopHat
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
| Biomaterial provider |
1)Stam lab; 2)CSHL lab
|
| Growth protocol |
Liver_Ren_protocol.pdf
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrRnaSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
****************************
GSM929721 record metadata submitted on May 10 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE93463
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrRnaSeq
|
| |
|
| Submission date |
May 10, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE36026 |
RNA-seq from ENCODE/LICR |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
| Relations |
| Reanalyzed by |
GSE80797 |
| Superseded by |
GSE93463 |
| SRA |
SRX147594 |
| BioSample |
SAMN00992244 |
| Named Annotation |
GSM929721_mm9_wgEncodeLicrRnaSeqLiverCellPapUE14halfC57bl6SigRep1.bigWig |
| Named Annotation |
GSM929721_mm9_wgEncodeLicrRnaSeqLiverCellPapUE14halfC57bl6SigRep2.bigWig |
