|
Status |
Public on May 10, 2012 |
Title |
LICR_RnaSeq_Limb_E14.5 (superseded by GSE93468) |
Sample type |
SRA |
|
|
Source name |
Limb
|
Organism |
Mus musculus |
Characteristics |
lab: LICR-m lab description: Ren - Ludwig Institue for Cancer Research datatype: RnaSeq datatype description: Sequencing analysis of RNA expression cell: Limb cell organism: mouse cell description: Limb cell sex: U age: E14.5 age description: Embryonic day 14.5 age: E14.5 age description: Embryonic day 14.5 labversion: 11/10/10 Lane 5 readtype: 1x36 readtype description: Single 36 nt reads replicate: 1 softwareversion: TopHat strain: C57BL/6 strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
Biomaterial provider |
1)LICR lab; 2)CSHL lab
|
Growth protocol |
Limb_Ren_protocol.pdf
|
Extracted molecule |
polyA RNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrRnaSeq
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
**************************** GSM929713 record metadata submitted on May 10 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE93468 ****************************
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrRnaSeq
|
|
|
Submission date |
May 10, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL13112 |
Series (2) |
GSE36026 |
RNA-seq from ENCODE/LICR |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
|
Relations |
Reanalyzed by |
GSE80797 |
Superseded by |
GSE93468 |
SRA |
SRX147586 |
BioSample |
SAMN00992236 |
Named Annotation |
GSM929713_mm9_wgEncodeLicrRnaSeqLimbCellPapUE14halfC57bl6SigRep1.bigWig |
Named Annotation |
GSM929713_mm9_wgEncodeLicrRnaSeqLimbCellPapUE14halfC57bl6SigRep2.bigWig |