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Sample GSM928 Query DataSets for GSM928
Status Public on Feb 12, 2002
Title heat shock 29 to 37, 20 minutes
Sample type RNA
 
Channel 1
Source name 29 t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 37 t20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.24 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n118
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 3 2 30 5 4 1 1 1 5 6 .576 0 -2.585 .183 72 63 7.5 6 .133 .167 .094 1142 177 73 88 67 82 -2.585
2 3 2 10 4 3 2 1 1 4 5 .886 0 -1.322 .471 48 50 3.333 2.5 .3 .4 .296 917 177 73 88 84 99 -1.322
3 3 2 46 25 24 2 1 1 28 29 .883 0 -.716 .518 80 77 1.917 1.643 .522 .609 .49 896 177 73 88 102 117 -.716
4 3 2 4 3 2 2 1 1 2 3 .821 0 -1 .8 39 44 2 2 .5 .5 .53 921 177 72 87 119 134 -1
5 3 2 29 17 16 2 1 1 19 20 .902 0 -.61 .592 73 72 1.813 1.526 .552 .655 .516 919 177 72 87 137 152 -.61
6 2 1 4 3 2 1 1 1 2 3 .74 0 -1 .5 57 45 2 2 .5 .5 .427 896 177 72 87 155 170 -1
7 2 2 1 3 2 1 1 1 2 3 .087 0 1 1 36 49 .5 .5 2 2 .163 938 177 71 86 172 187 1
8 3 2 1 3 2 2 1 1 2 3 .329 0 1 1.5 38 46 .5 .5 2 2 .484 919 177 71 86 190 205 1
9 3 2 2 1 2 1 1 1 2 .026 0 1 32 47 .022 908 177 71 86 207 222
10 2 2 1 1 2 1 1 1 .074 0 .667 38 38 .063 909 177 71 86 225 240
11 3 2 2 1 2 1 1 1 2 -.048 0 .857 31 46 -.039 919 177 70 85 243 258
12 3 2 2 6 5 2 1 1 6 7 .973 0 1.585 1 32 48 .4 .333 2.5 3 2.78 917 177 70 85 260 275 1.585
13 5 2 2 1 3 1 1 1 2 -.058 0 .75 26 47 -.045 896 177 70 85 278 293
14 4 2 1 3 1 1 1 .19 0 1 30 33 .12 929 177 69 84 295 310
15 3 2 1 2 1 1 1 .14 0 .667 31 36 .115 932 177 69 84 313 328
16 3 2 1 2 1 2 1 1 1 2 .044 0 0 .667 34 43 1 1 1 1 .043 906 177 69 84 331 346 0
17 3 2 1 2 1 2 1 1 1 2 .448 0 0 1 38 43 1 1 1 1 .596 907 177 69 84 348 363 0
18 3 2 1 3 1 1 1 .109 0 1 25 36 .066 919 177 68 83 366 381
19 3 2 1 3 1 1 1 .025 0 .5 35 35 .018 908 177 68 83 383 398
20 3 2 1 3 1 1 1 -.023 0 .667 26 33 -.012 909 177 68 83 401 416

Total number of rows: 9216

Table truncated, full table size 974 Kbytes.




Supplementary data files not provided
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