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Sample GSM927153 Query DataSets for GSM927153
Status Public on Nov 01, 2013
Title Tumor 24
Sample type genomic
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics race: African-American
age: 51
tissue type: Tumor
estrogen receptor status: Negative
triple negative or basal-like subtype: Yes
Stage: IIB
tumor grade: 3
node status: N1
survival (months): 36
survival event: Dead
death due to cancer: Yes
neoadjuvant therapy: No
hormone-therapy: No
chemotherapy: Yes
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from fresh frozen primary breast tumours following the Qiagen DNeasy Blood and Tissue Kit protocol. Briefly, tissues were pre-treated with Proteinase K at 55C over-night, then lysed, bound to the column, washed, and eluted. DNA was quantified using the nanodrop spectrophotomer.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Standard Infinium HD Methylation Assay protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.
Data processing GenomeStudio software v2010.3, Methylation module v1.8.5
Submission date May 03, 2012
Last update date Nov 01, 2013
Contact name Atsushi Terunuma
Organization name National Cancer Institute
Department Dermatology Branch
Street address 37 Convent Drive, 37/3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL13534
Series (2)
GSE37754 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)
GSE39004 Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

Data table header descriptions
VALUE M Values

Data table
cg00000029 -1.500646981
cg00000108 3.219219601
cg00000109 2.456791708
cg00000165 -1.102996323
cg00000236 2.606882612
cg00000289 1.047654956
cg00000292 1.884664494
cg00000321 0.887048947
cg00000363 -0.981280431
cg00000622 -4.740557089
cg00000658 2.088557583
cg00000714 -2.283805594
cg00000721 2.934496856
cg00000734 -2.681151576
cg00000769 -3.673093217
cg00000807 2.381791409
cg00000884 1.751644506
cg00000905 -2.587314682
cg00000924 0.711675475
cg00000948 1.535542514

Total number of rows: 485577

Table truncated, full table size 11103 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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