|
Status |
Public on Apr 30, 2012 |
Title |
PSU_ChipSeq_G1E_Pol2-4H8 |
Sample type |
SRA |
|
|
Source name |
G1E
|
Organism |
Mus musculus |
Characteristics |
lab: PSU-m lab description: Hardison - Penn State University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: G1E cell organism: mouse cell description: Gata1- erythroid progenitor cell sex: M antibody: Pol2-4H8 antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL24H8 antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes antibody vendorname: Abcam antibody vendorid: ab5408 age: E0 age description: Embryonic day 0 (stem cell) control: Input control description: Control signal which may be subtracted from experimental raw signal before peaks are called. controlid: wgEncodeEM001916 replicate: 1 strain: 129 strain description: Strain 129, has widely available embryonic stem cells
|
Biomaterial provider |
Mitch Weiss lab
|
Growth protocol |
G1E_Hardison_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
|
|
|
Submission date |
Apr 27, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (3) |
GSE36029 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51338 |
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis |
|
Relations |
SRA |
SRX145069 |
BioSample |
SAMN00990274 |
Named Annotation |
GSM923589_mm9_wgEncodePsuTfbsG1ePol24h8ME0S129InputRepSignalRep1.bigWig |
Named Annotation |
GSM923589_mm9_wgEncodePsuTfbsG1ePol24h8ME0S129InputRepSignalRep2.bigWig |
Named Annotation |
GSM923589_mm9_wgEncodePsuTfbsG1ePol24h8ME0S129InputSig.bigWig |