|
| Status |
Public on Apr 30, 2012 |
| Title |
PSU_ChipSeq_Erythrobl_TAL1_(SC-12984) |
| Sample type |
SRA |
| |
|
| Source name |
Erythrobl
|
| Organism |
Mus musculus |
| Characteristics |
lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Erythrobl
cell organism: mouse
cell description: Erythroblast, ter119+ cells from liver
cell sex: B
antibody: TAL1_(SC-12984)
antibody antibodydescription: goat polyclonal antibody; epitope mapping at the C-terminus of TAL1 of human origin, recommended for detection of TAL1 of mouse, rat and human origin. Antibody Target: TAL1
antibody targetdescription: TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-12984
age: E14.5
age description: Embryonic day 14.5
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM002350
replicate: 1
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
|
| Biomaterial provider |
Mitch Weiss lab
|
| Growth protocol |
Erythroblast__Hardison_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
|
| |
|
| Submission date |
Apr 27, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (4)
|
| GSE36029 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51337 |
Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis |
| GSE51338 |
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis |
|
| Relations |
| SRA |
SRX145062 |
| BioSample |
SAMN00990267 |
| Named Annotation |
GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepSignalRep1.bigWig |
| Named Annotation |
GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepSignalRep2.bigWig |
| Named Annotation |
GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepSignalRep3.bigWig |
| Named Annotation |
GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputPk.broadPeak.gz |
114.0 Kb |
(ftp)(http) |
BROADPEAK |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepPeaksRep1.broadPeak.gz |
62.5 Kb |
(ftp)(http) |
BROADPEAK |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepPeaksRep2.broadPeak.gz |
96.6 Kb |
(ftp)(http) |
BROADPEAK |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepPeaksRep3.broadPeak.gz |
109.3 Kb |
(ftp)(http) |
BROADPEAK |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepSignalRep1.bigWig |
4.3 Gb |
(ftp)(http) |
BIGWIG |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepSignalRep2.bigWig |
5.6 Gb |
(ftp)(http) |
BIGWIG |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputRepSignalRep3.bigWig |
5.4 Gb |
(ftp)(http) |
BIGWIG |
| GSM923582_mm9_wgEncodePsuTfbsErythroblTal1BE14halfCd1InputSig.bigWig |
6.2 Gb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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