GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM923576 Query DataSets for GSM923576
Status Public on Apr 30, 2012
Title PSU_ChipSeq_G1E-ER4_TAL1_(SC-12984)
Sample type SRA
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
antibody: TAL1_(SC-12984)
antibody antibodydescription: goat polyclonal antibody; epitope mapping at the C-terminus of TAL1 of human origin, recommended for detection of TAL1 of mouse, rat and human origin. Antibody Target: TAL1
antibody targetdescription: TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis.
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-12984
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001921
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_24hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Reanalyzed by GSE61349
SRA SRX145056
BioSample SAMN00990261
Named Annotation GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputRepSignalRep1.bigWig
Named Annotation GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputRepSignalRep2.bigWig
Named Annotation GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputPk.broadPeak.gz 79.1 Kb (ftp)(http) BROADPEAK
GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputRepPeaksRep1.broadPeak.gz 98.7 Kb (ftp)(http) BROADPEAK
GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputRepPeaksRep2.broadPeak.gz 37.6 Kb (ftp)(http) BROADPEAK
GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputRepSignalRep1.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputRepSignalRep2.bigWig 2.5 Gb (ftp)(http) BIGWIG
GSM923576_mm9_wgEncodePsuTfbsG1eer4e2Tal1ME0S129InputSig.bigWig 3.0 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap