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Sample GSM923574 Query DataSets for GSM923574
Status Public on Apr 30, 2012
Title PSU_ChipSeq_MEL_Input
Sample type SRA
 
Source name MEL
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: U
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
age: immortalized
age description: Immortal cells
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001929
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
 
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (2)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX145054
BioSample SAMN00990259
Named Annotation GSM923574_mm9_wgEncodePsuTfbsMelInputUImmortalC57bl6InputRepSignalRep1.bigWig
Named Annotation GSM923574_mm9_wgEncodePsuTfbsMelInputUImmortalC57bl6InputRepSignalRep2.bigWig
Named Annotation GSM923574_mm9_wgEncodePsuTfbsMelInputUImmortalC57bl6InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923574_mm9_wgEncodePsuTfbsMelInputUImmortalC57bl6InputRepSignalRep1.bigWig 988.6 Mb (ftp)(http) BIGWIG
GSM923574_mm9_wgEncodePsuTfbsMelInputUImmortalC57bl6InputRepSignalRep2.bigWig 5.1 Gb (ftp)(http) BIGWIG
GSM923574_mm9_wgEncodePsuTfbsMelInputUImmortalC57bl6InputSig.bigWig 5.3 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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