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Sample GSM923571 Query DataSets for GSM923571
Status Public on Apr 30, 2012
Title PSU_ChipSeq_G1E-ER4_CTCF
Sample type SRA
 
Source name G1E-ER4
Organism Mus musculus
Characteristics lab: PSU-m
lab description: Hardison - Penn State University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
age: E0
age description: Embryonic day 0 (stem cell)
control: Input
control description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEM001921
labversion: http://main.g2.bx.psu.edu/u/kanwei/h/12nov2009ln3-ctcf-g1e-er4e2-groomed-canonical
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider Mitch Weiss lab
Treatment protocol diffProtD_24hr
Growth protocol G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuTfbs
 
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36029 Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51338 Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Relations
SRA SRX145051
BioSample SAMN00990256
Named Annotation GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep1.bigWig
Named Annotation GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep2.bigWig
Named Annotation GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputSig.bigWig

Supplementary file Size Download File type/resource
GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputPk.broadPeak.gz 516.3 Kb (ftp)(http) BROADPEAK
GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepPeaksRep1.broadPeak.gz 428.1 Kb (ftp)(http) BROADPEAK
GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepPeaksRep2.broadPeak.gz 491.8 Kb (ftp)(http) BROADPEAK
GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep1.bigWig 2.0 Gb (ftp)(http) BIGWIG
GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep2.bigWig 1.8 Gb (ftp)(http) BIGWIG
GSM923571_mm9_wgEncodePsuTfbsG1eer4e2CtcfME0S129InputSig.bigWig 3.1 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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