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Sample GSM923452 Query DataSets for GSM923452
Status Public on Apr 27, 2012
Title UW_RepliSeq_HUVEC
Sample type SRA
Source name HUVEC
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: HUVEC
cell organism: human
cell description: umbilical vein endothelial cells
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
labexpid: DS9851
phase: G1b
phase description: Flow sorted, G1b phase corresponds to the second half of the first DNA content window
replicate: 1
Biomaterial provider Lonza
Growth protocol HUVEC_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 27, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE34399 Replication Timing by Repli-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSE53984
SRA SRX144823
BioSample SAMN00990242
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecG1bPctSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecG2PctSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecS1PctSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecS2PctSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecS3PctSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecS4PctSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecSumSignalRep1.bigWig
Named Annotation GSM923452_hg19_wgEncodeUwRepliSeqHuvecWaveSignalRep1.bigWig

Supplementary file Size Download File type/resource
GSM923452_hg19_wgEncodeUwRepliSeqHuvecG1bPctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecG2PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecPkRep1.bed.gz 37.7 Kb (ftp)(http) BED
GSM923452_hg19_wgEncodeUwRepliSeqHuvecS1PctSignalRep1.bigWig 8.1 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecS2PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecS3PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecS4PctSignalRep1.bigWig 8.2 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecSumSignalRep1.bigWig 12.4 Mb (ftp)(http) BIGWIG
GSM923452_hg19_wgEncodeUwRepliSeqHuvecValleysRep1.bed.gz 37.7 Kb (ftp)(http) BED
GSM923452_hg19_wgEncodeUwRepliSeqHuvecWaveSignalRep1.bigWig 9.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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