|
| Status |
Public on Oct 10, 2012 |
| Title |
Tup1 YMW97 012210 |
| Sample type |
SRA |
| |
|
| Source name |
Tup1 YMW97 012210
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
genotype/variation: TUP1 knock out
genetic background: BY4742
|
| Growth protocol |
cells were grown to a final OD600nm of 0.8 in 200 mL of YEP containing 2% Glucose
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
standard Illumina protocol
|
| |
|
| Library strategy |
MNase-Seq |
| Library source |
genomic |
| Library selection |
MNase |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Reads are mapped to genome using ELAND. Reads that are uniquely mapped and have no more than 2 mismatches are selected for future analysis. DANPOS is used to calculate nucleosome occupancy from raw reads do following analysis.
Genome_build: sacCer1
Supplementary_files_format_and_content: .wig':nucleosome occupancy data. '.bed':uniquely mapped high quality reads.
|
| |
|
| Submission date |
Apr 20, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
kaifu chen |
| E-mail(s) |
kaifuc@bcm.edu
|
| Organization name |
Baylor College of Medicine
|
| Street address |
1 Baylor plaza, suite 450A
|
| City |
Houston |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL9377 |
| Series (2) |
| GSE37465 |
Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor (MNase-Seq) |
| GSE37467 |
Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor |
|
| Relations |
| SRA |
SRX143865 |
| BioSample |
SAMN00862279 |
