GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM918761 Query DataSets for GSM918761
Status Public on Apr 19, 2012
Title LICR_ChipSeq_MEF_Pol2_adult-8wks
Sample type SRA
Source name MEF
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: MEF
cell organism: mouse
cell description: Mouse Embryonic Fibroblast
cell sex: M
antibody: Pol2
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001456
labversion: 05/19/10 Lane 2
replicate: 1
softwareversion: ELAND
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider LICR lab
Growth protocol MEF_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 19, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36027 Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX143853
BioSample SAMN00862267
Named Annotation GSM918761_mm9_wgEncodeLicrTfbsMefPol2MAdult8wksC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM918761_mm9_wgEncodeLicrTfbsMefPol2MAdult8wksC57bl6StdPk.broadPeak.gz 364.8 Kb (ftp)(http) BROADPEAK
GSM918761_mm9_wgEncodeLicrTfbsMefPol2MAdult8wksC57bl6StdSig.bigWig 74.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap