GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM918408 Query DataSets for GSM918408
Status Public on Apr 19, 2012
Title Caltech_ChipSeq_C2C12_H3K27me3_Control_32bp
Sample type SRA
Source name C2C12
Organism Mus musculus
Characteristics lab: Caltech-m
lab description: Wold - Califonia Institute of Technology
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: C2C12
cell organism: mouse
cell description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex: F
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
control: Control_32bp
control description: This data represents a control being compared to experiments using read length of 32 bp
treatment: None
treatment description: No special treatment or protocol applies
age: immortalized
age description: Immortal cells
control: Control_32bp
control description: This data represents a control being compared to experiments using read length of 32 bp
controlid: 10135
labexpid: 10502
labversion: Myoblast
replicate: 1
strain: C3H
strain description: Strain C3H, Very related to C57BL/6
Biomaterial provider Barbara Wold lab
Treatment protocol None
Growth protocol C2C12_Wold_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 19, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36023 Histone Modifications by ChIP-seq from ENCODE/Caltech
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX143609
BioSample SAMN00862076
Named Annotation GSM918408_mm9_wgEncodeCaltechHistC2c12H3k27me3FCntrl32bPcr2xSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM918408_mm9_wgEncodeCaltechHistC2c12H3k27me3FCntrl32bPcr2xPkRep1.narrowPeak.gz 79.1 Kb (ftp)(http) NARROWPEAK
GSM918408_mm9_wgEncodeCaltechHistC2c12H3k27me3FCntrl32bPcr2xSigRep1.bigWig 171.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap