|
| Status |
Public on Apr 13, 2012 |
| Title |
Caltech_ChipSeq_C2C12_CEBPB_Control_50bp |
| Sample type |
SRA |
| |
|
| Source name |
C2C12
|
| Organism |
Mus musculus |
| Characteristics |
lab: Caltech-m
lab description: Wold - Califonia Institute of Technology
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: C2C12
cell organism: mouse
cell description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex: F
antibody: CEBPB
antibody description: Rabbit polyclonal IgG. Antibody Target: CEBPB
antibody targetdescription: epitope mapping at the C-terminus of C/EBP-beta of rat origin
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-150
control: Control_50bp
control description: This data represents a control being compared to experiments using read length of 50 bp
treatment: None
treatment description: No special treatment or protocol applies
age: immortalized
age description: Immortal cells
control: Control_50bp
control description: This data represents a control being compared to experiments using read length of 50 bp
controlid: 11612
labexpid: 11942
labversion: Myoblast
replicate: 1
strain: C3H
strain description: Strain C3H, Very related to C57BL/6
|
| Biomaterial provider |
Barbara Wold lab
|
| Treatment protocol |
None
|
| Growth protocol |
C2C12_Wold_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCaltechTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCaltechTfbs
|
| |
|
| Submission date |
Apr 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (3) |
| GSE36024 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX142530 |
| BioSample |
SAMN00857800 |
| Named Annotation |
GSM915179_mm9_wgEncodeCaltechTfbsC2c12CebpbFCntrl50bPcr1xSigRep1.bigWig |
