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Sample GSM915166 Query DataSets for GSM915166
Status Public on Apr 13, 2012
Title Caltech_ChipSeq_C2C12_Myogenin_(sc-12732)_Control_32bp
Sample type SRA
Source name C2C12
Organism Mus musculus
Characteristics lab: Caltech-m
lab description: Wold - Califonia Institute of Technology
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: C2C12
cell organism: mouse
cell description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex: F
antibody: Myogenin_(sc-12732)
antibody description: mouse monoclonal antibody; epitope mapping within amino acids 138-158 of myogenin of rat origin. Antibody Target: Myogenin
antibody targetdescription: Myogenin is a muscle-specific transcription factor that can induce myogenesis in a variety of cell types in tissue culture. It is a member of a large family of proteins related by sequence homology, the helix-loop-helix (HLH) proteins. It is essential for the development of functional skeletal muscle. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-12732
control: Control_32bp
control description: This data represents a control being compared to experiments using read length of 32 bp
treatment: None
treatment description: No special treatment or protocol applies
age: immortalized
age description: Immortal cells
control: Control_32bp
control description: This data represents a control being compared to experiments using read length of 32 bp
controlid: 10135
labexpid: 10599
labversion: Myoblast
replicate: 1
strain: C3H
strain description: Strain C3H, Very related to C57BL/6
Biomaterial provider Barbara Wold lab
Treatment protocol None
Growth protocol C2C12_Wold_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Apr 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (3)
GSE36024 Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX142517
BioSample SAMN00857808
Named Annotation GSM915166_mm9_wgEncodeCaltechTfbsC2c12Sc12732FCntrl32bPcr2xSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM915166_mm9_wgEncodeCaltechTfbsC2c12Sc12732FCntrl32bPcr2xPkRep1.narrowPeak.gz 11.1 Kb (ftp)(http) NARROWPEAK
GSM915166_mm9_wgEncodeCaltechTfbsC2c12Sc12732FCntrl32bPcr2xSigRep1.bigWig 36.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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