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Sample GSM905088 Query DataSets for GSM905088
Status Public on Jun 18, 2012
Title WT
Sample type SRA
Source name G9A TT2 ES cells
Organism Mus musculus
Characteristics genotype: wild type
treatment: Vehicle treated
cell type: embryonic stem cells
Treatment protocol RNA prepared by RiboPure (ambion)
Growth protocol Stadard ES cell conditions with Lif
Extracted molecule total RNA
Extraction protocol TruSeq RNA sample prep kit
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
Data processing Paired end alignments with Tophat allowing 4 mismatches per 100 bp
Genome Build:
WT.bed: mm9
Submission date Mar 28, 2012
Last update date May 15, 2019
Contact name Todd Macfarlan
Organization name The Salk Institute
Street address 10010 North Torrey Pines
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
Platform ID GPL13112
Series (2)
GSE33923 2C::tomato ES cells, 2-cell embryos and wild type oocytes
GSE36896 RNA-Seq from wt and G9A knockout ES cells
SRA SRX132053
BioSample SAMN00847505

Supplementary file Size Download File type/resource
GSM905088_WT.bed.gz 153.6 Mb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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