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Sample GSM877338 Query DataSets for GSM877338
Status Public on Aug 27, 2012
Title piPCH358Col1
Sample type genomic
 
Source name Differentiated Induced Pluripotent Cancer Cell
Organism Homo sapiens
Characteristics cell type: post induced pluripotent cancer cell
cell line: post-iPCH358Col1
gender: male
molecule type: Bisulfite converted DNA
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3 and Cy5
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description biological replicate 2
Data processing Separate colors are background-subtracted followed by quantile normalization.
 
Submission date Feb 17, 2012
Last update date Aug 27, 2012
Contact name Jason Lai
E-mail(s) jasonlaikh@gmail.com
Organization name Max Planck Institute For Heart and Lung Research
Department Developmental Genetics
Lab Stainier Lab
Street address Ludwigstrasse 43
City Bad Nauheim
State/province Hessen
ZIP/Postal code 61231
Country Germany
 
Platform ID GPL8490
Series (2)
GSE35912 Reversal of Aberrant Cancer Methylome and Transcriptome upon Direct Reprogramming of Lung Cancer Cells [Methylation]
GSE35913 Reversal of Aberrant Cancer Methylome and Transcriptome upon Direct Reprogramming of Lung Cancer Cells.

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE Detection_Pval
cg00000292 0.543960914244184 0.47292746112152 0
cg00002426 -5.41434683976813 -5.63589459790546 0
cg00003994 2.94095162356259 3.32335934008499 0
cg00005847 1.95079073530698 2.17337472749633 0
cg00006414 -4.64664308723532 -5.54240203849311 0
cg00007981 -4.31071967819665 -4.33322126441872 0
cg00008493 5.33747835778639 5.62351574149055 0
cg00008713 -5.38508099400998 -5.54499242264326 0
cg00009407 -6.66517056699002 -7.3813575426071 0
cg00010193 0.0397080365720997 0.0333766230109192 0
cg00011459 3.38659631172705 3.82032134066169 0
cg00012199 -6.33231721434657 -7.04165915163721 0
cg00012386 -5.68048147826255 -5.50693742386873 0
cg00012792 -5.06445791720169 -4.66529621344263 0
cg00013618 2.76877180392496 2.63083930410789 0
cg00014085 -6.00448532645443 -6.72270213649215 0
cg00014837 2.27163420295761 2.6367897186785 0
cg00015770 -4.75565439408392 -4.7082751483496 0
cg00016968 -2.78019349944695 -2.43073572186697 0
cg00019495 -1.3293623644013 -1.2082713130918 0

Total number of rows: 27578

Table truncated, full table size 1305 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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