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Sample GSM877295 Query DataSets for GSM877295
Status Public on Aug 27, 2012
Title H1P99B
Sample type RNA
 
Source name human ESC
Organism Homo sapiens
Characteristics cell type: human embyronic stem cell line
cell line: H1 p99
gender: male
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Biological replicate 2
Data processing Background-subtracted followed by quantile normalization. Impute insignificant detection value (detection_pval>0.05) to minimum detectable value
 
Submission date Feb 17, 2012
Last update date Aug 27, 2012
Contact name Jason Lai
E-mail(s) jasonlaikh@gmail.com
Organization name Max Planck Institute For Heart and Lung Research
Department Developmental Genetics
Lab Stainier Lab
Street address Ludwigstrasse 43
City Bad Nauheim
State/province Hessen
ZIP/Postal code 61231
Country Germany
 
Platform ID GPL10558
Series (2)
GSE35911 Reversal of Aberrant Cancer Methylome and Transcriptome upon Direct Reprogramming of Lung Cancer Cells [Expression]
GSE35913 Reversal of Aberrant Cancer Methylome and Transcriptome upon Direct Reprogramming of Lung Cancer Cells.

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 19 -1.588817 4.024297 0.5662338 19
ILMN_2055271 20.3970895833333 24.05083 7.142162 0.01948052 23
ILMN_1736007 19 -3.242652 3.516596 0.6285715 23
ILMN_2383229 19 -2.557403 3.703062 0.6077922 28
ILMN_1806310 19 9.644082 6.622019 0.1714286 22
ILMN_1779670 19 -2.716289 3.122469 0.6155844 28
ILMN_1653355 19.4563691666667 22.74461 4.333338 0.02207792 31
ILMN_1717783 19 -14.87002 3.503604 0.9038961 25
ILMN_1705025 19 0.262715 4.657806 0.5012987 22
ILMN_1814316 19 5.566903 4.097511 0.2935065 23
ILMN_2359168 19 -3.412166 4.248936 0.6298701 24
ILMN_1731507 19 -16.26009 2.55534 0.9324675 19
ILMN_1787689 19 3.236252 5.245688 0.3805195 19
ILMN_3241953 19 2.644791 5.151094 0.4038961 23
ILMN_1745607 19 -17.05534 3.733321 0.9415584 25
ILMN_2136495 18.5723591666667 21.59192 4.99931 0.02467532 29
ILMN_1668111 19 12.53276 7.715385 0.1038961 22
ILMN_2295559 19 3.046753 4.518365 0.3844156 19
ILMN_1735045 111.647172916667 132.3135 9.623302 0 29
ILMN_1680754 19 2.621193 4.311822 0.4051948 20

Total number of rows: 47231

Table truncated, full table size 2308 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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