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Sample GSM876163 Query DataSets for GSM876163
Status Public on Jun 18, 2012
Title YFP-pos GMP Dicer null rep3
Sample type RNA
 
Source name YFP-pos GMPs
Organism Mus musculus
Characteristics genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer null
cell type: YFP-positive granulocyte-macrophage progenitor
Extracted molecule total RNA
Extraction protocol EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol, eukaryotic Target Labeling Assay
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol, Affymetrix 7G
Description C57BL/6, Female, bonemarrow, GMPs
Dicer null
Data processing Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
 
Submission date Feb 15, 2012
Last update date Jun 18, 2012
Contact name Stefan J Erkeland
E-mail(s) s.erkeland@erasmusmc.nl
Phone +31(0)107043034
Fax +31(0)107044745
Organization name ErasmusMC
Department Hematology
Lab 1330
Street address Dr. Molewaterplein 50
City Rotterdam
ZIP/Postal code 3015GE
Country Netherlands
 
Platform ID GPL1261
Series (1)
GSE35844 Dicer1 deletion in myeloid-committed progenitors causes neutrophil dysplasia and blocks macrophage/dendritic cell development in mice

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal

Data table
ID_REF VALUE
1415670_at 568.0498913
1415671_at 744.5260722
1415672_at 1497.19664
1415673_at 124.9681303
1415674_a_at 183.3171648
1415675_at 125.1157223
1415676_a_at 853.7563766
1415677_at 117.4842187
1415678_at 588.313003
1415679_at 853.7222071
1415680_at 329.9997474
1415681_at 241.6120772
1415682_at 58.65320656
1415683_at 1460.362297
1415684_at 138.5160133
1415685_at 449.4687479
1415686_at 543.8894092
1415687_a_at 790.7441931
1415688_at 1073.290809
1415689_s_at 217.8381644

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM876163_GMP_3_flfl_20110614.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM876163_GMP_3_flfl_20110614.CHP.gz 250.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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