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Sample GSM876162 Query DataSets for GSM876162
Status Public on Jun 18, 2012
Title YFP-pos GMP Dicer null rep2
Sample type RNA
 
Source name YFP-pos GMPs
Organism Mus musculus
Characteristics genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer null
cell type: YFP-positive granulocyte-macrophage progenitor
Extracted molecule total RNA
Extraction protocol EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
Label Biotin
Label protocol standard Affymetrix protocol, eukaryotic Target Labeling Assay
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol, Affymetrix 7G
Description C57BL/6, Female, bonemarrow, GMPs
Dicer null
Data processing Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
 
Submission date Feb 15, 2012
Last update date Jun 18, 2012
Contact name Stefan J Erkeland
E-mail(s) s.erkeland@erasmusmc.nl
Phone +31(0)107043034
Fax +31(0)107044745
Organization name ErasmusMC
Department Hematology
Lab 1330
Street address Dr. Molewaterplein 50
City Rotterdam
ZIP/Postal code 3015GE
Country Netherlands
 
Platform ID GPL1261
Series (1)
GSE35844 Dicer1 deletion in myeloid-committed progenitors causes neutrophil dysplasia and blocks macrophage/dendritic cell development in mice

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal

Data table
ID_REF VALUE
1415670_at 428.3710487
1415671_at 683.6366961
1415672_at 1694.789562
1415673_at 135.3684005
1415674_a_at 201.5139968
1415675_at 146.1003046
1415676_a_at 880.5363428
1415677_at 100.7054129
1415678_at 567.4204624
1415679_at 820.7827884
1415680_at 264.3007202
1415681_at 292.7353801
1415682_at 91.86471657
1415683_at 1368.315964
1415684_at 143.6221048
1415685_at 440.6878132
1415686_at 398.8620759
1415687_a_at 816.8545854
1415688_at 1166.743907
1415689_s_at 269.4078569

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM876162_GMP_2_flfl_20110614.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM876162_GMP_2_flfl_20110614.CHP.gz 250.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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