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Sample GSM872 Query DataSets for GSM872
Status Public on Feb 12, 2002
Title heat shock 80 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 80 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n81
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 21 19 430 316 248 79 68 67 243 310 .643 0 -.823 .638 97 76 1.734 1.77 .577 .565 .437 1206 145 121 136 110 125 -.823
2 21 19 517 473 416 66 57 56 408 464 .588 0 -.342 1 66 59 1.243 1.267 .805 .789 .482 1036 145 120 135 127 142 -.342
3 19 16 1825 1389 1340 59 49 48 1314 1362 .711 0 -.474 .725 95 87 1.362 1.389 .734 .72 .499 1040 145 120 135 144 159 -.474
4 16 13 78 91 46 55 45 44 45 89 .358 0 -.794 1.45 46 34 1.696 1.733 .59 .577 .219 1027 145 120 135 162 177 -.794
5 15 12 527 592 551 51 41 40 540 580 .796 0 .035 1.037 77 71 .956 .976 1.046 1.025 .871 1017 145 120 135 179 194 .035
6 15 12 25 70 27 53 43 42 27 69 .336 0 .111 1.955 40 34 .926 .926 1.08 1.08 .495 1049 145 119 134 197 212 .111
7 14 12 2 54 10 54 44 43 10 53 -.052 0 2.322 3.111 30 25 .2 .2 5 5 -.255 1040 145 119 134 214 229 2.322
8 17 13 45 139 45 44 44 -.074 0 5.818 19 24 -.24 1027 145 119 134 232 247
9 16 12 40 5 131 35 34 5 39 -.026 0 5.833 25 25 -.112 1017 145 119 134 249 264
10 48 12 4 43 8 135 35 34 8 42 -.154 0 1 2.5 33 35 .5 .5 2 2 -.393 1017 145 119 134 267 282 1
11 46 14 2 101 48 96 53 52 47 99 -.034 0 4.555 4.969 28 51 .042 .043 24 23.5 -.211 1049 145 118 133 284 299 4.555
12 39 15 1 101 46 100 55 54 45 99 .066 0 5.492 7 30 46 .022 .022 46 45 .415 1040 145 118 133 302 317 5.492
13 44 15 42 2 63 40 39 2 41 -.012 0 4.5 15 25 -.043 1027 145 118 133 319 334
14 25 15 50 15 46 35 34 15 49 -.041 0 3.333 29 44 -.135 1007 145 118 133 337 352
15 20 14 1 61 24 48 37 36 24 60 .062 0 4.585 3.692 22 44 .042 .042 24 24 .254 1049 145 117 132 354 369 4.585
16 20 13 1 43 8 44 35 34 8 42 -.069 0 3 6 30 29 .125 .125 8 8 -.246 1039 145 117 132 372 387 3
17 17 12 1 52 19 43 33 32 19 51 .05 0 4.248 4.353 33 42 .053 .053 19 19 .193 1027 145 117 132 389 404 4.248
18 15 12 1 48 11 49 37 36 11 47 .029 0 3.459 3.444 30 31 .091 .091 11 11 .097 1017 145 117 132 407 422 3.459
19 14 12 1 45 8 48 37 36 8 44 .044 0 3 3 28 33 .125 .125 8 8 .15 1017 145 117 132 424 439 3
20 15 12 1 40 4 44 36 35 4 39 -.218 0 2 1.85 28 31 .25 .25 4 4 -.606 1049 145 116 131 442 457 2

Total number of rows: 9216

Table truncated, full table size 1076 Kbytes.




Supplementary data files not provided
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