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Sample GSM865 Query DataSets for GSM865
Status Public on Feb 12, 2002
Title heat shock 40 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 40 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n79
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 13 11 351 273 234 51 39 41 243 284 .729 0 -.531 .73 97 76 1.5 1.444 .667 .692 .629 1206 145 148 163 101 116 -.531
2 11 10 247 292 253 51 39 41 263 304 .628 0 .091 1.417 68 57 .976 .939 1.024 1.065 .653 1027 145 147 162 118 133 .091
3 9 8 971 996 958 50 38 40 998 1038 .711 0 .04 1.061 91 87 1.014 .973 .987 1.028 .696 1027 145 147 162 135 150 .04
4 9 8 79 120 82 60 38 40 85 125 .785 0 .106 3.2 42 42 .963 .929 1.038 1.076 .725 1017 145 147 162 153 168 .106
5 8 7 783 769 730 60 39 41 760 801 .718 0 -.043 1.057 88 75 1.073 1.03 .932 .971 .68 1017 145 147 162 170 185 -.043
6 8 6 84 109 72 46 37 39 75 114 .56 0 -.163 2.357 44 31 1.167 1.12 .857 .893 .538 1040 145 146 161 188 203 -.163
7 8 7 48 9 48 39 41 9 50 .009 0 5.857 26 34 .055 1027 145 146 161 205 220
8 8 7 53 12 52 41 43 12 55 .097 0 5 28 33 .596 1017 145 146 161 223 238
9 9 7 51 10 53 41 43 10 53 -.078 0 5.667 29 33 -.444 1017 145 146 161 240 255
10 10 8 59 11 58 48 50 11 61 .002 0 7 19 34 .01 1049 145 145 160 258 273
11 11 9 71 19 61 52 54 20 74 .016 0 3.889 28 33 .129 1040 145 145 160 275 290
12 10 9 3 73 17 66 56 58 18 76 .024 0 2.585 6.308 40 34 .176 .167 5.667 6 .165 1027 145 145 160 293 308 2.585
13 11 9 11 619 566 67 53 55 590 645 .24 0 5.745 7.773 36 39 .019 .019 51.455 53.636 15.57 1017 145 145 160 310 325 5.745
14 10 9 2 67 9 69 58 60 10 70 .075 0 2.322 4.059 33 25 .222 .2 4.5 5 .384 1049 145 144 159 328 343 2.322
15 10 9 1 69 9 72 60 63 9 72 .074 0 3.17 4.429 33 26 .111 .111 9 9 .521 1040 145 144 159 345 360 3.17
16 9 8 2 75 15 72 60 63 15 78 -.119 0 2.907 7.5 36 28 .133 .133 7.5 7.5 -.993 1017 145 144 159 363 378 2.907
17 9 7 2 71 6 78 65 68 6 74 -.08 0 1.585 4.6 40 30 .333 .333 3 3 -.499 1017 145 144 159 380 395 1.585
18 8 7 2 77 12 78 65 68 12 80 -.067 0 2.585 5.6 46 24 .167 .167 6 6 -.547 1049 145 143 158 398 413 2.585
19 8 7 1 64 2 77 62 65 2 67 .008 0 1 6.833 40 24 .5 .5 2 2 .059 1040 145 143 158 415 430 1
20 8 7 1 81 18 77 63 66 18 84 -.053 0 4.17 7.286 31 34 .056 .056 18 18 -.356 1026 145 143 158 433 448 4.17

Total number of rows: 9216

Table truncated, full table size 1060 Kbytes.




Supplementary data files not provided
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