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Sample GSM857 Query DataSets for GSM857
Status Public on Feb 12, 2002
Title heat shock 20 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 20 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n66
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 255 232 987 989 721 375 268 327 879 1206 .605 0 -.167 .671 97 88 1.369 1.123 .73 .891 .598 1206 145 106 121 112 127 -.167
2 246 226 584 929 652 383 277 338 795 1133 .798 0 .445 1.238 37 45 .896 .735 1.116 1.361 .839 1004 145 106 121 129 144 .445
3 228 210 3448 3517 3236 406 281 343 3946 4289 .928 0 .195 .982 79 76 1.066 .874 .939 1.144 .884 1017 145 106 121 146 161 .195
4 228 206 325 593 325 383 268 327 396 723 .725 0 .285 1.732 22 28 1 .821 1 1.218 .734 1027 145 106 121 164 179 .285
5 225 208 2423 2797 2539 362 258 315 3096 3411 .93 0 .354 1.06 65 72 .954 .783 1.048 1.278 .937 1039 145 106 121 181 196 .354
6 264 218 344 782 517 377 265 323 631 954 .823 0 .875 2.402 17 35 .665 .545 1.503 1.834 .994 1034 145 106 121 199 214 .875
7 275 219 565 296 406 269 328 361 689 .447 0 3.25 6 21 13.45 1032 145 106 121 216 231
8 261 212 18 353 68 439 285 348 82 430 .084 0 2.188 5.208 4 24 .265 .22 3.778 4.556 .164 1052 145 106 121 234 249 2.188
9 243 197 2 343 78 417 265 323 95 418 .341 0 5.57 5.701 7 26 .026 .021 39 47.5 1.575 1037 145 107 122 251 266 5.57
10 229 194 33 494 255 383 239 291 311 602 .553 0 3.236 5.603 8 29 .129 .106 7.727 9.424 1.808 1020 145 107 122 269 284 3.236
11 277 195 17 312 79 456 233 284 96 380 .359 0 2.497 4.176 6 22 .215 .177 4.647 5.647 .704 998 145 107 122 286 301 2.497
12 364 198 3 351 104 456 247 301 127 428 .185 0 5.404 4.275 5 28 .029 .024 34.667 42.333 .791 1047 145 107 122 304 319 5.404
13 318 200 429 174 371 255 311 212 523 .738 0 5.807 4 28 8.447 1059 145 107 122 321 336
14 239 191 295 43 368 252 307 53 360 .05 0 2.793 6 18 .154 1049 145 107 122 339 354
15 221 188 12 334 83 367 251 306 101 407 .228 0 3.073 1.707 7 22 .145 .119 6.917 8.417 1.479 1049 145 107 122 356 371 3.073
16 196 181 5 347 96 380 251 306 117 423 .253 0 4.548 4.161 8 22 .052 .043 19.2 23.4 1.43 1049 145 107 122 374 389 4.548
17 180 167 22 446 215 345 231 282 262 544 .09 0 3.574 3.458 14 35 .102 .084 9.773 11.909 .925 1007 145 108 123 391 406 3.574
18 178 163 11 324 92 365 232 283 112 395 .541 0 3.348 2.343 8 23 .12 .098 8.364 10.182 1.452 1017 145 108 123 409 424 3.348
19 183 167 381 145 387 236 288 177 465 .213 0 6.37 4 27 2.158 1027 145 108 123 426 441
20 184 171 7 275 41 368 234 285 50 335 .243 0 2.837 3.4 4 20 .171 .14 5.857 7.143 1.082 1040 145 108 123 444 459 2.837

Total number of rows: 9216

Table truncated, full table size 1124 Kbytes.




Supplementary data files not provided
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