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Sample GSM854 Query DataSets for GSM854
Status Public on Feb 12, 2002
Title heat shock 05 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 05 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n63
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 192 147 1022 981 896 264 85 91 964 1055 .515 0 -.084 .769 99 100 1.141 1.06 .877 .943 .604 1206 145 120 135 101 116 -.084
2 193 141 78 237 156 265 81 87 168 255 .124 0 1.107 .979 34 42 .5 .464 2 2.154 .299 1017 145 120 135 118 133 1.107
3 165 129 1609 1774 1698 234 76 82 1826 1908 .617 0 .183 1.015 77 77 .948 .881 1.055 1.135 .703 1017 145 120 135 136 151 .183
4 168 129 121 293 216 252 77 83 232 315 .496 0 .939 1.346 16 31 .56 .522 1.785 1.917 .612 1027 145 120 135 153 168 .939
5 174 129 889 1023 941 297 82 88 1012 1100 .668 0 .187 .989 67 78 .945 .878 1.058 1.138 .681 1040 145 120 135 171 186 .187
6 162 126 306 679 598 283 81 87 643 730 .312 0 1.071 1.16 30 46 .512 .476 1.954 2.101 .645 1058 145 120 135 188 203 1.071
7 166 126 58 281 200 266 81 87 215 302 .415 0 1.89 3.086 16 33 .29 .27 3.448 3.707 1.459 1049 145 120 135 206 221 1.89
8 167 127 35 399 316 265 83 89 340 429 .292 0 3.28 2.575 21 38 .111 .103 9.029 9.714 2.105 1049 145 120 135 223 238 3.28
9 183 133 16 285 198 289 87 94 212 306 .309 0 3.728 4.571 10 34 .081 .075 12.375 13.25 1.563 1017 145 121 136 241 256 3.728
10 188 132 60 387 297 350 90 97 319 416 .069 0 2.411 2.537 15 35 .202 .188 4.95 5.317 .244 1017 145 121 136 258 273 2.411
11 169 128 66 272 188 304 84 90 202 292 .38 0 1.614 2.255 17 37 .351 .327 2.848 3.061 .516 1017 145 121 136 276 291 1.614
12 175 127 97 383 298 280 85 91 321 412 .099 0 1.727 2.326 20 41 .326 .302 3.072 3.309 .213 1026 145 121 136 293 308 1.727
13 184 127 70 322 230 285 92 99 247 346 .445 0 1.819 2.429 17 40 .304 .283 3.286 3.529 1.13 1040 145 121 136 311 326 1.819
14 168 124 8 294 209 274 85 91 225 316 .073 0 4.814 1.551 11 24 .038 .036 26.125 28.125 1.018 1049 145 121 136 328 343 4.814
15 155 122 24 189 113 242 76 82 121 203 .386 0 2.334 1.553 9 35 .212 .198 4.708 5.042 .908 1049 145 121 136 346 361 2.334
16 165 122 17 235 163 275 72 77 176 253 .37 0 3.372 5.476 13 34 .104 .097 9.588 10.353 2.931 1049 145 121 136 363 378 3.372
17 338 124 44 244 166 694 78 84 178 262 .51 0 2.016 2.588 15 35 .265 .247 3.773 4.045 1.026 1017 145 122 137 381 396 2.016
18 330 124 63 416 343 652 73 78 369 447 .225 0 2.55 1.967 14 39 .184 .171 5.444 5.857 .579 1017 145 122 137 398 413 2.55
19 165 125 31 359 284 259 75 81 305 386 .177 0 3.298 3 14 31 .109 .102 9.161 9.839 1.418 1027 145 122 137 416 431 3.298
20 167 123 51 249 179 260 70 75 193 268 .255 0 1.92 3.235 17 42 .285 .264 3.51 3.784 .814 1039 145 122 137 433 448 1.92

Total number of rows: 9216

Table truncated, full table size 1148 Kbytes.




Supplementary data files not provided
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