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Sample GSM851294 Query DataSets for GSM851294
Status Public on Jul 01, 2012
Title RenLab-H3K4me3-embryonic-limb
Sample type SRA
Source name Mouse E14.5 limb
Organism Mus musculus
Characteristics strain: C57Bl/6
antibody: Millipore, 05-745
Treatment protocol None
Growth protocol Cells were derived from E14.5 C57Bl/6 mouse embryos
Extracted molecule genomic DNA
Extraction protocol See
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Description H3K4me3 IP
Data processing fastq: Illumina's Genome Analyzer Pipeline
bam files: Alignment to mm9 using Bowtie with a seed length of 32 bases and up to 2 mismatches. Only sequences mapping to exactly one location were kept.
Submission date Dec 20, 2011
Last update date May 15, 2019
Contact name Bing Ren
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
Platform ID GPL13112
Series (2)
GSE29184 A draft map of cis-regulatory sequences in the mouse genome
GSE29218 A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq]
SRA SRX112944
BioSample SAMN00768118

Supplementary file Size Download File type/resource
GSM851294_RenLab-H3K4me3-embryonic-limb-DM458.bam 842.3 Mb (ftp)(http) BAM
GSM851294_RenLab-H3K4me3-embryonic-limb-DM579.bam 1.8 Gb (ftp)(http) BAM
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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