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GEO accession:
Sample GSM849031
Query DataSets for GSM849031
Status
Public on Dec 14, 2011
Title
UW_DnaseDgf_HPAF
Sample type
SRA
Source name
HPAF
Organism
Homo sapiens
Characteristics
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HPAF
cell organism: human
cell description: pulmonary artery fibroblasts
cell lineage: mesoderm
cell sex: U
labversion: Bowtie 0.12.7
Biomaterial provider
ScienCell
Growth protocol
HPAF_Stam_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Submission date
Dec 14, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE26328
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA
SRX111771
BioSample
SAMN00765598
Named Annotation
GSM849031_hg19_wgEncodeUwDgfHpafRaw.bigWig
Named Annotation
GSM849031_hg19_wgEncodeUwDgfHpafSig.bigWig
Supplementary file
Size
Download
File type/resource
GSM849031_hg19_wgEncodeUwDgfHpafHotspots.broadPeak.gz
3.5 Mb
(ftp)
(http)
BROADPEAK
GSM849031_hg19_wgEncodeUwDgfHpafPk.narrowPeak.gz
2.8 Mb
(ftp)
(http)
NARROWPEAK
GSM849031_hg19_wgEncodeUwDgfHpafRaw.bigWig
324.9 Mb
(ftp)
(http)
BIGWIG
GSM849031_hg19_wgEncodeUwDgfHpafSig.bigWig
429.3 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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