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Sample GSM849029 Query DataSets for GSM849029
Status Public on Dec 14, 2011
Title UW_DnaseDgf_AoAF
Sample type SRA
 
Source name AoAF
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: AoAF
cell organism: human
cell description: aortic adventitial fibroblast cells
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
labversion: Bowtie 0.12.7
Biomaterial provider Lonza
Growth protocol AoAF_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Submission date Dec 14, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA SRX111769
BioSample SAMN00765596
Named Annotation GSM849029_hg19_wgEncodeUwDgfAoafRaw.bigWig
Named Annotation GSM849029_hg19_wgEncodeUwDgfAoafSig.bigWig

Supplementary file Size Download File type/resource
GSM849029_hg19_wgEncodeUwDgfAoafHotspots.broadPeak.gz 3.5 Mb (ftp)(http) BROADPEAK
GSM849029_hg19_wgEncodeUwDgfAoafPk.narrowPeak.gz 2.8 Mb (ftp)(http) NARROWPEAK
GSM849029_hg19_wgEncodeUwDgfAoafRaw.bigWig 357.0 Mb (ftp)(http) BIGWIG
GSM849029_hg19_wgEncodeUwDgfAoafSig.bigWig 582.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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