GEO help: Mouse over screen elements for information.
Status
Public on Jan 20, 2012
Title
HCC1806, copy number variation SNP6.0 WYETH_BREAST replicate
Sample type
genomic
Source name
HCC1806
Organism
Homo sapiens Characteristics
cell line: HCC1806
Extracted molecule
genomic DNA
Extraction protocol
DNA were isolated using an DNeasy kit (Qiagen, Germantown, MD).
Label
biotin
Label protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Hybridization protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Scan protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Data processing
Affymetrix SNP6.0 data were processed using the aroma.affymetrix R package according to the methods of H. Bengtsson et al., (Bengtsson, Irizarry et al. 2008 [PMID 18204055]).
Submission date
Dec 09, 2011
Last update date
Jan 20, 2012
Contact name
Keith A Ching
E-mail(s)
keith.ching@pfizer.com Organization name
Pfizer, Inc.
Department
Computational Sciences
Street address
10777 Science Center Dr.
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL6801 Series (1)
GSE34211 Pfizer Molecular Profile Data for Cell Lines
Data table header descriptions ID_REF PROBE_DESIGN_ID
VALUE Normalized probeset summaries CES (chip effects set)
Data table ID_REF VALUE SNP_A-2131660
5089.96533203125
SNP_A-1967418
1063.265625
SNP_A-1969580
7560.4091796875
SNP_A-4263484
5079.4970703125
SNP_A-1978185
1545.39636230469
SNP_A-4264431
2839.09765625
SNP_A-1980898
2214.51782226562
SNP_A-1983139
3647.966796875
SNP_A-4265735
1706.09912109375
SNP_A-1995832
1761.17980957031
SNP_A-1995893
4148.9501953125
SNP_A-1997689
5879.64306640625
SNP_A-1997709
2373.7216796875
SNP_A-1997896
4701.21484375
SNP_A-1997922
1895.92651367188
SNP_A-2000230
3470.72631835938
SNP_A-2000332
8928.76171875
SNP_A-2000337
4336.02880859375
SNP_A-2000342
3587.51806640625
SNP_A-4268172
1386.28686523438
1877772 52581 Kbytes .Supplementary file Size Download File type/resource GSM847482_HCC1806.CEL.gz
31.8 Mb
(ftp) (http) CEL
Processed data included within Sample table
