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Status
Public on Jan 20, 2012
Title
BT549, copy number variation SNP6.0 WYETH_BREAST
Sample type
genomic
Source name
BT549
Organism
Homo sapiens Characteristics
cell line: BT549
Extracted molecule
genomic DNA
Extraction protocol
DNA were isolated using an DNeasy kit (Qiagen, Germantown, MD).
Label
biotin
Label protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Hybridization protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Scan protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Data processing
Affymetrix SNP6.0 data were processed using the aroma.affymetrix R package according to the methods of H. Bengtsson et al., (Bengtsson, Irizarry et al. 2008 [PMID 18204055]).
Submission date
Dec 09, 2011
Last update date
Jan 20, 2012
Contact name
Keith A Ching
E-mail(s)
keith.ching@pfizer.com Organization name
Pfizer, Inc.
Department
Computational Sciences
Street address
10777 Science Center Dr.
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL6801 Series (1)
GSE34211 Pfizer Molecular Profile Data for Cell Lines
Data table header descriptions ID_REF PROBE_DESIGN_ID
VALUE Normalized probeset summaries CES (chip effects set)
Data table ID_REF VALUE SNP_A-2131660
4464.73193359375
SNP_A-1967418
886.176879882812
SNP_A-1969580
9244.1083984375
SNP_A-4263484
4203.42626953125
SNP_A-1978185
1545.90698242188
SNP_A-4264431
3322.17822265625
SNP_A-1980898
3096.06225585938
SNP_A-1983139
4089.44458007812
SNP_A-4265735
1464.63781738281
SNP_A-1995832
1876.26196289062
SNP_A-1995893
5821.4150390625
SNP_A-1997689
5138.1123046875
SNP_A-1997709
1996.52990722656
SNP_A-1997896
3241.65576171875
SNP_A-1997922
2196.908203125
SNP_A-2000230
3085.44189453125
SNP_A-2000332
9329.9765625
SNP_A-2000337
4300.47900390625
SNP_A-2000342
4373
SNP_A-4268172
1020.07556152344
1877772 52593 Kbytes .Supplementary file Size Download File type/resource GSM847199_BT549.CEL.gz
31.2 Mb
(ftp) (http) CEL
Processed data included within Sample table
