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| Status |
Public on Jan 20, 2012 |
| Title |
HCT15, gene expression array U133Plus2 |
| Sample type |
RNA |
| |
|
| Source name |
HCT15
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HCT15
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA were isolated using an RNeasy kit (Qiagen, Germantown, MD).
|
| Label |
biotin
|
| Label protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
|
| |
|
| Hybridization protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
|
| Scan protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
|
| Data processing |
Data were normalized using Bioconductor and the R package gcrma.
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| |
|
| Submission date |
Dec 06, 2011 |
| Last update date |
Jan 20, 2012 |
| Contact name |
Keith A Ching |
| E-mail(s) |
keith.ching@pfizer.com
|
| Organization name |
Pfizer, Inc.
|
| Department |
Computational Sciences
|
| Street address |
10777 Science Center Dr.
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE34211 |
Pfizer Molecular Profile Data for Cell Lines |
|
| Data table header descriptions |
| ID_REF |
PROBE_DESIGN_ID |
| VALUE |
log2R gcRMA normalized |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
11.6733920865716 |
| 1053_at |
10.996267127682 |
| 117_at |
2.62529836680301 |
| 121_at |
5.97966341072144 |
| 1255_g_at |
2.00430253128704 |
| 1294_at |
1.98966280103 |
| 1316_at |
3.09220167085148 |
| 1320_at |
4.9981908401644 |
| 1405_i_at |
3.27162977242416 |
| 1431_at |
2.729427387525 |
| 1438_at |
5.01426688662384 |
| 1487_at |
9.85582579770923 |
| 1494_f_at |
2.31123063509173 |
| 1552256_a_at |
11.601812571556 |
| 1552257_a_at |
10.7080974651445 |
| 1552258_at |
3.18844523761081 |
| 1552261_at |
2.6183983894321 |
| 1552263_at |
8.688141290314 |
| 1552264_a_at |
9.99265164810688 |
| 1552266_at |
2.64339350413955 |
Total number of rows: 54675
Table truncated, full table size 1478 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM844554_HCT15_1_PFIZER.CEL.gz |
4.9 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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