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| Status |
Public on Jan 20, 2012 |
| Title |
BT549, gene expression array U133Plus2 Pfizer |
| Sample type |
RNA |
| |
|
| Source name |
BT549
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: BT549
origin: breast
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA were isolated using an RNeasy kit (Qiagen, Germantown, MD).
|
| Label |
biotin
|
| Label protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
|
| |
|
| Hybridization protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
|
| Scan protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
|
| Data processing |
Data were normalized using Bioconductor and the R package gcrma.
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| |
|
| Submission date |
Dec 05, 2011 |
| Last update date |
Jan 20, 2012 |
| Contact name |
Keith A Ching |
| E-mail(s) |
keith.ching@pfizer.com
|
| Organization name |
Pfizer, Inc.
|
| Department |
Computational Sciences
|
| Street address |
10777 Science Center Dr.
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE34211 |
Pfizer Molecular Profile Data for Cell Lines |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
gcRMA |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
8.87352607141971 |
| 1053_at |
11.1431210260073 |
| 117_at |
2.65478432488025 |
| 121_at |
6.62872038251229 |
| 1255_g_at |
2.0734948164992 |
| 1294_at |
2.31686253465379 |
| 1316_at |
4.27448653676364 |
| 1320_at |
3.06020938169764 |
| 1405_i_at |
9.05965007676101 |
| 1431_at |
2.89357931150787 |
| 1438_at |
1.91793363995801 |
| 1487_at |
8.83164112726781 |
| 1494_f_at |
2.33385209715989 |
| 1552256_a_at |
9.10142193186995 |
| 1552257_a_at |
8.46209247694697 |
| 1552258_at |
3.33645523190034 |
| 1552261_at |
2.75706759866656 |
| 1552263_at |
6.81566899374824 |
| 1552264_a_at |
5.85584276491887 |
| 1552266_at |
3.08689005975363 |
Total number of rows: 54675
Table truncated, full table size 1478 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM843480_BT549_1_PFIZER.CEL.gz |
4.5 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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