|
| Status |
Public on Jan 01, 2013 |
| Title |
fibroblast_K2_untreated_1h_rep2 |
| Sample type |
RNA |
| |
|
| Source name |
fibroblast_K2_untreated_1h
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HDFa
cell type: fibroblasts
|
| Treatment protocol |
The medium was replaced by fresh medium non-supplemented, containing dimethyl sulfooxide (DMSO) added to a final concentration of 0.05%, or genistein at 30, 60 and 100 µM concentrations, with 0.05% DMSO. The experimental treatment was carried out for 1h, 24 h and 48 h period.
|
| Growth protocol |
Fibroblasts were cultured from cryo-preserved cells in Dulbecco’s modified Eagle’s medium containing 10% fetal bovine serum and 1% antibiotic/antimycotic solution at 37 oC in a humidified atmosphere of 5% CO2. 10E5 cells were seeded in 6-well plates and grown to a confluence of approximately 80 %.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from cells using the High Pure RNA Isolation Kit in accordance with the prescribed protocol, quantified with Quant iT RiboGreen Assay Kit
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA was prepared with the Ambion TotalPrepAmp Kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
replicate 2
|
| Data processing |
The data were normalized using quantile normalization with Illumina GenomeStudio software package (gene expression module version 1.9.0).
|
| |
|
| Submission date |
Dec 01, 2011 |
| Last update date |
Jan 26, 2015 |
| Contact name |
Magdalena Gabig-Cimińska |
| E-mail(s) |
m.gabig@biol.ug.edu.pl
|
| Organization name |
University of Gdańsk
|
| Department |
of Molecular Biology
|
| Street address |
Wita Stwosza 59
|
| City |
Gdańsk |
| ZIP/Postal code |
80-308 |
| Country |
Poland |
| |
|
| Platform ID |
GPL6947 |
| Series (1) |
| GSE34074 |
Genome-wide microarray analysis of normal human fibroblasts in response to genistein |
|
| Relations |
| Reanalyzed by |
GSE65314 |
