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Sample GSM84090

Query DataSets for GSM84090

Status

Public on Feb 28, 2007

Title

Expression data of Colorectal Cancer 36

Sample type

RNA

Source name

Patient_36

Organism

Homo sapiens

Characteristics

Tissue: Colorecal Cancer

Extracted molecule

total RNA

Extraction protocol

Surgically isolated nonneoplastic rectal mucosa were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.

Label

biotin

Label protocol

Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Sporadic Ca

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Nov 17, 2005

Last update date

Feb 28, 2007

Contact name

Toshiaki Watanabe

Phone

81-3-5800-8653

Organization name

University of Tokyo

Department

Department of Surgical Oncology

Street address

7-3-1, Hongo

City

Bunkyo-ku

State/province

Tokyo

ZIP/Postal code

113-8655

Country

Japan

Platform ID

GPL570

Series (1)

GSE3629

Molecular Marker for predicting development of cancer in ulcerative colitis

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF	VALUE	ABS_CALL
1552256_a_at	510.8	P
1552257_a_at	48.9	P
1552258_at	546.7	P
1552261_at	124.5	P
1552263_at	10.1	A
1552264_a_at	60.7	P
1552266_at	27.8	P
1552269_at	12.5	A
1552271_at	48.3	P
1552272_a_at	1.8	A
1552274_at	20.1	A
1552275_s_at	218.7	P
1552276_a_at	21.6	A
1552277_a_at	277.7	P
1552278_a_at	457	P
1552279_a_at	35	A
1552280_at	3.6	A
1552281_at	73	P
1552283_s_at	58.6	P
1552286_at	22.7	P

Total number of rows: 54675

Table truncated, full table size 931 Kbytes.

Supplementary data files not provided