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Sample GSM84040

Query DataSets for GSM84040

Status

Public on Feb 28, 2007

Title

Expression data of UC 39

Sample type

RNA

Source name

UC 39

Organism

Homo sapiens

Characteristics

Tissue: Nonneoplastic rectal mucosa

Extracted molecule

total RNA

Extraction protocol

Surgically isolated nonneoplastic rectal mucosa were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.

Label

biotin

Label protocol

Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

UC-Ca

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Nov 17, 2005

Last update date

Feb 28, 2007

Contact name

Toshiaki Watanabe

Phone

81-3-5800-8653

Organization name

University of Tokyo

Department

Department of Surgical Oncology

Street address

7-3-1, Hongo

City

Bunkyo-ku

State/province

Tokyo

ZIP/Postal code

113-8655

Country

Japan

Platform ID

GPL570

Series (1)

GSE3629

Molecular Marker for predicting development of cancer in ulcerative colitis

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF	VALUE	ABS_CALL
1552256_a_at	88.3	P
1552257_a_at	415.6	P
1552258_at	11.9	A
1552261_at	34.8	A
1552263_at	75.6	P
1552264_a_at	82.7	P
1552266_at	50.1	A
1552269_at	1.1	A
1552271_at	6.8	A
1552272_a_at	21.6	A
1552274_at	110.9	P
1552275_s_at	49.4	A
1552276_a_at	29.1	A
1552277_a_at	108.2	P
1552278_a_at	18.3	A
1552279_a_at	82.4	P
1552280_at	15.6	A
1552281_at	119	P
1552283_s_at	65.7	P
1552286_at	32.6	P

Total number of rows: 54675

Table truncated, full table size 944 Kbytes.

Supplementary data files not provided