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Sample GSM84030

Query DataSets for GSM84030

Status

Public on Feb 28, 2007

Title

Expression data of UC 29

Sample type

RNA

Source name

UC 29

Organism

Homo sapiens

Characteristics

Tissue: Nonneoplastic rectal mucosa

Extracted molecule

total RNA

Extraction protocol

Surgically isolated nonneoplastic rectal mucosa were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.

Label

biotin

Label protocol

Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

UC-NonCa

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Nov 17, 2005

Last update date

Feb 28, 2007

Contact name

Toshiaki Watanabe

Phone

81-3-5800-8653

Organization name

University of Tokyo

Department

Department of Surgical Oncology

Street address

7-3-1, Hongo

City

Bunkyo-ku

State/province

Tokyo

ZIP/Postal code

113-8655

Country

Japan

Platform ID

GPL570

Series (1)

GSE3629

Molecular Marker for predicting development of cancer in ulcerative colitis

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF	VALUE	ABS_CALL
1552256_a_at	1420.6	P
1552257_a_at	1394.2	P
1552258_at	100.7	A
1552261_at	205.1	P
1552263_at	526.8	P
1552264_a_at	572.8	P
1552266_at	202.1	A
1552269_at	40	A
1552271_at	40.9	A
1552272_a_at	228.1	A
1552274_at	3048.8	P
1552275_s_at	1680.4	P
1552276_a_at	54.5	A
1552277_a_at	560.9	A
1552278_a_at	10.4	A
1552279_a_at	290.9	A
1552280_at	542.3	P
1552281_at	32.2	A
1552283_s_at	183.7	A
1552286_at	405	A

Total number of rows: 54675

Table truncated, full table size 983 Kbytes.

Supplementary data files not provided