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Sample GSM84004 Query DataSets for GSM84004
Status Public on Feb 28, 2007
Title Expression data of UC 3
Sample type RNA
 
Source name UC 3
Organism Homo sapiens
Characteristics Tissue: Nonneoplastic rectal mucosa
Extracted molecule total RNA
Extraction protocol Surgically isolated nonneoplastic rectal mucosa were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label biotin
Label protocol Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description UC-NonCa
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Nov 17, 2005
Last update date Feb 28, 2007
Contact name Toshiaki Watanabe
Phone 81-3-5800-8653
Organization name University of Tokyo
Department Department of Surgical Oncology
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL570
Series (1)
GSE3629 Molecular Marker for predicting development of cancer in ulcerative colitis

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF VALUE ABS_CALL
1552256_a_at 131 P
1552257_a_at 294.3 P
1552258_at 96.2 P
1552261_at 10.8 A
1552263_at 53.7 P
1552264_a_at 74.2 P
1552266_at 18.8 A
1552269_at 4.4 A
1552271_at 6 A
1552272_a_at 35.4 P
1552274_at 50.5 P
1552275_s_at 40.2 P
1552276_a_at 6.8 A
1552277_a_at 140.3 P
1552278_a_at 10.6 A
1552279_a_at 86.9 M
1552280_at 35.9 P
1552281_at 126.7 P
1552283_s_at 92 P
1552286_at 55.5 A

Total number of rows: 54675

Table truncated, full table size 940 Kbytes.




Supplementary data files not provided
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