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Sample GSM82361 Query DataSets for GSM82361
Status Public on Apr 30, 2007
Title 1246_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14498.541 180.1871 G 148.6486 14579.541 4790 17300.1152 161 14.31752682 98.08060743 81.8051 81 11.3871 122 180.1871
1002 1 900.9891 11.1974 G 10.6919 976.9891 1116 539.2728 92 10.82303238 91.37677853 76.7953 76 10.2512 177 11.1974
1003 1 8.3611 0.1039 L 0.934 86.3611 90 13.0791 36 6.770275116 92.46755414 76.8667 78 9.645 186 0.1039
1004 1 18.1522 0.2256 G 1.0322 95.1522 97 14.5123 46 7.653039932 92.18245234 77.2229 77 10.1216 181 0.2256
1005 1 15.6154 0.1941 G 1.0228 91.6154 95 12.1161 39 7.04672575 89.57667228 75.978 76 9.0511 188 0.1941
1006 1 21.0488 0.2616 G 1.0656 98.0488 98 13.0458 41 7.225152016 92.01485317 76.7912 77 10.0099 188 0.2616
1007 1 26.6 0.3306 G 1.1276 102.6 101 11.0612 55 8.368284225 90.98870495 74.9121 76 9.9925 188 0.3306
1008 1 16588.4043 206.1598 G 169.8427 16668.4043 6582 18726.9395 168 14.62546539 98.14027373 80.3833 80 12.0935 124 206.1598
1009 1 545.043 6.7738 G 6.8641 620.043 692 290.8879 93 10.88169479 90.33102993 76.548 75 10.2207 183 6.7738
1010 1 729.9667 9.072 G 9.1239 803.9667 945 391.3613 90 10.70474434 88.11674866 75.1285 74 9.4112 185 9.072
1011 1 115.05 1.4298 G 2.1295 189.05 195 46.8249 80 10.09253025 88.7760473 75.2338 74 9.8507 160 1.4298
1012 1 96.3636 1.1976 G 1.9316 173.3636 183 44.5109 77 9.90148735 89.75325636 77.6703 77 8.5022 188 1.1976
1013 1 40.2083 0.4997 G 1.2902 118.2083 117 16.8242 72 9.574614525 91.61771816 76.9011 78 9.0785 188 0.4997
1014 1 9.8667 0.1226 L 0.9524 87.8667 86 14.2729 60 8.740387917 92.26296406 76.8235 78 9.5086 123 0.1226
1015 1 14346.1416 178.2931 G 151.8805 14424.1416 5779 16788.9531 150 13.81976604 94.97033688 79.6417 78 11.3136 124 178.2931
1016 1 38.0175 0.4725 G 1.2576 114.0175 110 15.4198 57 8.519076347 90.66337904 76.2706 76 9.7756 176 0.4725
1017 1 7.8036 0.097 L 0.9203 83.8036 84 13.5573 56 8.444016457 91.06012605 75.6538 76 10.0401 108 0.097
1018 1 10.6512 0.1324 L 0.9557 86.6512 86 15.5277 43 7.39927721 90.67230764 76.5055 76 9.7815 188 0.1324
1019 1 13.4054 0.1666 L 0.9815 91.4054 94 11.2957 37 6.86366272 93.12477847 77.6374 78 10.0832 188 0.1666
1020 1 41.2258 0.5124 G 1.2871 116.2258 114 18.0746 62 8.884866714 90.29963423 74.8407 75 10.1998 188 0.5124

Total number of rows: 54359

Table truncated, full table size 5820 Kbytes.




Supplementary file Size Download File type/resource
GSM82361.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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